Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G63260.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G63260
Gene model
AT5G63260.1
Description
zinc finger (CCCH-type) family protein
Family
C3H
3D structure (top 5)
1M9O 2D9N 2E5S 2RHK 2CQE
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496509 Score: 1

Sorghum bicolor

5008647 Score: 1

Expression data

Expressed Sequence Tags

At.43350
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16 /cds=p(153,1460) /gb=AK228790
At.50258
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT3G48440) mRNA, complete cds /cds=p(1,1347) /gb=NM_114703
Mtr.1706
EST332423 KV3 Medicago truncatula cDNA clone pKV3-13C20, mRNA sequence /clone=pKV3-13C20 /gb=AW736409
Mtr.9647
s13dNF86B05GS042_467652 Germinating Seed Medicago truncatula cDNA, mRNA sequence /gb=CX542172
Pba.7568
WS02530.BR_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_A02 5', mRNA sequence /clone=WS02530_A02 /clone_end=5' /gb=DT480811
Pth.7568
WS02530.BR_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_A02 5', mRNA sequence /clone=WS02530_A02 /clone_end=5' /gb=DT480811
Pth.9941
WS01224.B21.1_M19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_M19 3', mRNA sequence /clone=WS01224_M19 /clone_end=3' /gb=CV236627
Vvi.8494
WIN012.BR_A13 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN012_A13 5', mRNA sequence /clone=WIN012_A13 /clone_end=5' /gb=EC920688

Domain Architecture

zf-CCCH PF00642 AT5G63260.1
DomainStartEndBit scoreE-value
zf-CCCH10212850.75e-12
zf-CCCH14917538.32.8e-08
zf-CCCH19522146.78.3e-11
zf-CCCH33536127.93.7e-05
zf-CCCH38140739.31.3e-08

Sequences