Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G65210.6

Identification

Species:
Arabidopsis thaliana
Locus
AT5G65210
Gene model
AT5G65210.6
Gene names and synonyms
TGA1 iHOP
Description
TGA1
Family
bZIP

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.15614
Arabidopsis thaliana mRNA for bZIP transcription factor TGA3/AtbZIP22, clone: RAFL09-56-B20 /gb=AK227036
At.16522
Arabidopsis thaliana bZIP family transcription factor (AT1G77920) mRNA, complete cds /cds=p(464,1570) /gb=NM_106441
At.20818
Arabidopsis thaliana TGA1 (TGA1) mRNA, complete cds /cds=p(649,1545) /gb=NM_001085331
At.23884
Arabidopsis thaliana At5g06950 mRNA for putative bZip transcription factor AtbZip20/tga2, complete cds, clone: RAFL17-34-M19 /cds=p(278,1270) /gb=AK117686
At.24071
Arabidopsis thaliana TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (TGA4) mRNA, complete cds /cds=p(256,1350) /gb=NM_121041
At.70207
Arabidopsis thaliana TGA6 (TGA1a-related gene 6); DNA binding / transcription factor (TGA6) mRNA, complete cds /cds=p(422,1396) /gb=NM_202564
Hv.6102
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf125e16, mRNA sequence /gb=AK251460
Os.10220
Oryza sativa OsNIF2 mRNA for bZIP transcription factor, complete cds /cds=p(506,1510) /gb=AB051295
Os.15238
Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence /cds=p(401,1402) /gb=AK242257
Os.20077
Oryza sativa Japonica Group cDNA clone:002-121-A09, full insert sequence /cds=p(235,1404) /gb=AK107028
Os.42388
Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence /cds=p(130,1749) /gb=AK101338
Os.439
Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence /cds=p(429,1418) /gb=AK242743
Os.49126
Oryza sativa Japonica Group cDNA clone:J023013G15, full insert sequence /cds=p(379,1833) /gb=AK069411
Os.54058
Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence /cds=p(458,1927) /gb=AK101620
Os.56267
Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence /cds=p(156,1313) /gb=AK109719
Ppa.11800
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_71017) mRNA, complete cds /cds=p(1,987) /gb=XM_001757906
Ppa.13187
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_188998) mRNA, complete cds /cds=p(161,1180) /gb=XM_001770508
Ppa.23006
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147335) mRNA, partial cds /cds=p(1,873) /gb=XM_001779404
Pth.11053
Populus trichocarpa clone PX0011_D24 unknown mRNA /cds=p(1293,1982) /gb=EF144213
Pth.16575
Populus trichocarpa clone WS0111_I20 unknown mRNA /cds=p(417,1487) /gb=EF145013

Domain Architecture

bZIP_1 PF00170 AT5G65210.6
DomainStartEndBit scoreE-value
bZIP_1106937.25.8e-08
bZIP_21060200.0036

Sequences