Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G001279_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G001279_P01
Family
C3H
3D structure (top 5)
2FO1 3D9H 2RFA 1S70 1SW6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488102 Score: 1

Zea mays

GRMZM2G024061_P01 Score: 1
GRMZM2G001279_P01 Score: 0.946

Carica papaya

evm.TU.supercontig_92.23 Score: 1

Zea mays

GRMZM2G024061_P01 Score: 1
GRMZM2G001279_P01 Score: 0.948

Populus trichocarpa

560536 Score: 1

Zea mays

GRMZM2G024061_P01 Score: 1
GRMZM2G180979_P01 Score: 1
GRMZM2G180979_P02 Score: 1
GRMZM2G001279_P01 Score: 0.932

Expression data

Expressed Sequence Tags

At.23950
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G41900) mRNA, complete cds /cds=p(317,2467) /gb=NM_129754
Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Mtr.4296
EST510150 HOGA Medicago truncatula cDNA clone pHOGA-23E11 5' end, mRNA sequence /clone=pHOGA-23E11 /clone_end=5' /gb=BG648531
Os.20244
Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence /cds=p(113,1273) /gb=AK100770
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477
Vvi.5260
WIN025.TB24.1_L08 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_L08 3', mRNA sequence /clone=WIN025_L08 /clone_end=3' /gb=EC924525

Domain Architecture

Ank PF00023 GRMZM2G001279_P01
DomainStartEndBit scoreE-value
Ank12616136.31.2e-07
zf-CCCH30533026.20.00014

Sequences