Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G002160_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G002160_P01
Family
SWI/SNF-BAF60b
3D structure (top 5)
1UHR 1V31 1V32 2Z5S
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.45849
Arabidopsis thaliana SWIB complex BAF60b domain-containing protein (AT3G01890) mRNA, complete cds /cds=p(318,1694) /gb=NM_111055
At.6512
Arabidopsis thaliana CHC1 (CHC1) mRNA, complete cds /cds=p(95,1699) /gb=NM_121421
Os.59109
Oryza sativa Japonica Group cDNA clone:002-140-E07, full insert sequence /gb=AK108218
Ppa.15799
Physcomitrella patens subsp. patens SWI/SNF transcription activation complex subunit (CHC1502) mRNA, complete cds /cds=p(1,1422) /gb=XM_001780121
Ptp.12715
N024B07.5pR Populus bark cDNA library Populus tremula x Populus tremuloides cDNA clone N024B07 5', mRNA sequence /clone=N024B07 /clone_end=5' /gb=DN495180
Sbi.10454
OX1_24_F06.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_24_F06_A002 5', mRNA sequence /clone=OX1_24_F06_A002 /clone_end=5' /gb=CN139887 /gi=45975491

Domain Architecture

SWIB PF02201 GRMZM2G002160_P01
DomainStartEndBit scoreE-value
SWIB22530072.71.4e-18

Sequences