Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G002845_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G002845_P02
Family
SWI/SNF-BAF60b
3D structure (top 5)
1V32 2BZE 2Z5S 1UHR 1V31
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

332593 Score: 1

Zea mays

GRMZM2G000298_P01 Score: 1
GRMZM2G002845_P01 Score: 1
GRMZM2G107824_P01 Score: 1
GRMZM2G000298_P02 Score: 0.92
GRMZM2G002845_P02 Score: 0.92
GRMZM2G107824_P02 Score: 0.92

Arabidopsis thaliana

AT5G63700.1 Score: 1

Zea mays

GRMZM2G000298_P01 Score: 1
GRMZM2G002845_P01 Score: 1
GRMZM2G107824_P01 Score: 1
GRMZM2G000298_P02 Score: 0.92
GRMZM2G002845_P02 Score: 0.92
GRMZM2G107824_P02 Score: 0.92

Carica papaya

evm.TU.supercontig_86.38 Score: 1

Zea mays

GRMZM2G000298_P01 Score: 1
GRMZM2G002845_P01 Score: 1
GRMZM2G107824_P01 Score: 1
GRMZM2G000298_P02 Score: 0.921
GRMZM2G002845_P02 Score: 0.921
GRMZM2G107824_P02 Score: 0.921

Zea mays

GRMZM2G000298_P02 Score: 1
GRMZM2G002845_P02 Score: 1
GRMZM2G107824_P02 Score: 1
GRMZM2G000298_P01 Score: 0.914
GRMZM2G002845_P01 Score: 0.914
GRMZM2G107824_P01 Score: 0.914

Oryza sativa subsp. japonica

LOC_Os05g34780.1 Score: 1

Populus trichocarpa

568469 Score: 1

Zea mays

GRMZM2G000298_P01 Score: 1
GRMZM2G002845_P01 Score: 1
GRMZM2G107824_P01 Score: 1
GRMZM2G000298_P02 Score: 0.917
GRMZM2G002845_P02 Score: 0.917
GRMZM2G107824_P02 Score: 0.917

Zea mays

GRMZM2G000298_P02 Score: 1
GRMZM2G002845_P02 Score: 1
GRMZM2G107824_P02 Score: 1
GRMZM2G000298_P01 Score: 0.938
GRMZM2G002845_P01 Score: 0.938
GRMZM2G107824_P01 Score: 0.938
GRMZM2G000298_P03 Score: 0.902
GRMZM2G002845_P03 Score: 0.902
GRMZM2G107824_P03 Score: 0.902

Vitis vinifera

GSVIVP00035317001 Score: 1

Expression data

Expressed Sequence Tags

Os.27987
Oryza sativa (japonica cultivar-group) Os05g0420800 (Os05g0420800) mRNA, complete cds /cds=p(1,1905) /gb=NM_001062114

Domain Architecture

SWIB PF02201 GRMZM2G002845_P02
DomainStartEndBit scoreE-value
SWIB24031523.40.00014
Plus-336748186.78.5e-23

Sequences