Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G006493_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G006493_P02
Family
C3H
3D structure (top 5)
1M9O 2CQE 2E5S 2RHK 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_4.51 Score: 1

Zea mays

GRMZM2G006493_P03 Score: 1
GRMZM2G006493_P01 Score: 0.983
GRMZM2G006493_P02 Score: 0.972

Oryza sativa subsp. japonica

LOC_Os12g18120.2 Score: 1
LOC_Os12g18120.1 Score: 0.981

Populus trichocarpa

422794 Score: 1

Zea mays

GRMZM2G006493_P02 Score: 1
GRMZM2G006493_P01 Score: 0.925
GRMZM2G006493_P03 Score: 0.921

Sorghum bicolor

5008647 Score: 1

Zea mays

GRMZM2G006493_P02 Score: 1
GRMZM2G006493_P03 Score: 1
GRMZM2G006493_P01 Score: 0.981

Vitis vinifera

GSVIVP00015900001 Score: 1

Expression data

Expressed Sequence Tags

Hv.21522
AV918456 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare subsp. vulgare cDNA clone bags21c02 3', mRNA sequence /clone=bags21c02 /clone_end=3' /gb=AV918456
Os.14312
Oryza sativa (japonica cultivar-group) Os12g0278800 (Os12g0278800) mRNA, complete cds /cds=p(132,1721) /gb=NM_001073101
Sbi.9737
OX1_36_F07.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_36_F07_A002 3', mRNA sequence /clone=OX1_36_F07_A002 /clone_end=3' /gb=CN140448 /gi=45976430

Domain Architecture

zf-CCCH PF00642 GRMZM2G006493_P02
DomainStartEndBit scoreE-value
zf-CCCH10713338.62.4e-08
zf-CCCH25327928.52.7e-05
zf-CCCH30132742.31.8e-09
zf-CCCH44847428.52.7e-05
zf-CCCH49452032.91.3e-06

Sequences