Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G006736_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G006736_P01
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 2A6H 1L9Z 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G006736_P01 Score: 1
GRMZM2G006736_P02 Score: 1
GRMZM2G006736_P03 Score: 1
GRMZM2G098893_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g06630.1 Score: 1

Populus trichocarpa

665539 Score: 1

Zea mays

GRMZM2G006736_P01 Score: 1
GRMZM2G006736_P02 Score: 1
GRMZM2G006736_P03 Score: 1

Sorghum bicolor

4763513 Score: 1

Zea mays

GRMZM2G006736_P01 Score: 1
GRMZM2G006736_P02 Score: 1
GRMZM2G006736_P03 Score: 1

Zea mays

GRMZM2G006736_P01 Score: 1
GRMZM2G006736_P02 Score: 1
GRMZM2G006736_P03 Score: 1

Vitis vinifera

GSVIVP00013881001 Score: 1

Expression data

Expressed Sequence Tags

At.25556
Arabidopsis thaliana SIG2 mRNA for plastid RNA polymerase sigma-subunit, complete cds /cds=p(265,1773) /gb=AB004821
Hv.13585
HDP21E20w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP21E20, mRNA sequence /clone=HDP21E20 /gb=EX588748
Mtr.15977
EST1225753 MTY Medicago truncatula cDNA clone MTYAL66, mRNA sequence /clone=MTYAL66 /gb=DW016792
Os.3407
Oryza sativa Japonica Group mRNA for plastid RNA polymerase sigma factor, complete cds /cds=p(175,1734) /gb=AB005290
Pba.603
V010F07.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V010F07 3', mRNA sequence /clone=V010F07 /clone_end=3' /gb=DN491654
Pth.603
V010F07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU875731
Sbi.69
Sorghum bicolor mRNA for plastid RNA polymerase sigma factor /cds=p(222,1724) /gb=Y14276
Vvi.3158
CAB70003_IIIaR_D09 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70003_IIIaR_D09 3', mRNA sequence /clone=CAB70003_IIIaR_D09 /clone_end=3' /gb=CB980733

Domain Architecture

Sigma70_r2 PF04542 GRMZM2G006736_P01
DomainStartEndBit scoreE-value
Sigma70_r225732769.31.4e-17
Sigma70_r3331411683.5e-17
Sigma70_r443048241.82.7e-09

Sequences