Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G007987_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G007987_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.10899
Arabidopsis thaliana ATMYB12/MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor (ATMYB12/MYB12) mRNA, complete cds /cds=p(102,1217) /gb=NM_130314
At.20521
Arabidopsis thaliana MYB4 (myb domain protein 4); transcription factor (MYB4) mRNA, complete cds /cds=p(316,1164) /gb=NM_120023
At.23277
Arabidopsis thaliana MYB3 (myb domain protein 3); DNA binding / transcription factor (MYB3) mRNA, complete cds /cds=p(95,868) /gb=NM_102111
At.26279
Arabidopsis thaliana putative transcription factor (At5g49330) mRNA, complete cds /cds=p(86,1114) /gb=AF371977
At.4218
Arabidopsis thaliana ATMYB6 (MYB DOMAIN PROTEIN 6); DNA binding / transcription factor (ATMYB6) mRNA, complete cds /cds=p(54,764) /gb=NM_117014
At.47205
Arabidopsis thaliana AtMYB11 (myb domain protein 11); DNA binding / transcription factor (AtMYB11) mRNA, complete cds /cds=p(1,1032) /gb=NM_116126
At.9932
Arabidopsis thaliana AtMYB9 (myb domain protein 9); DNA binding (AtMYB9) mRNA, complete cds /cds=p(326,1336) /gb=NM_203063
Hv.12535
HV_CEb0020E02f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0020E02f, mRNA sequence /clone=HV_CEb0020E02f /gb=BE558747
Hv.21408
H.vulgare myb1 mRNA /cds=p(212,1015) /gb=X70877
Mtr.9208
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-10 unknown mRNA /cds=m(91,948) /gb=BT052056
Mtr.9245
Medicago truncatula clone MTYF5_F6_F7_F81G-A-23 unknown mRNA /cds=p(83,850) /gb=BT051911
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.7125
CT851199 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRN116P12, mRNA sequence /clone=OSIGCRN116P12 /gb=CT851199
Os.72787
CT852975 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRN116K19, mRNA sequence /clone=OSIGCRN116K19 /gb=CT852975
Os.86695
Oryza sativa Japonica Group cDNA, clone: J090061C22, full insert sequence /gb=AK288699
Sbi.2545
OX1_61_A11.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_61_A11_A002 5', mRNA sequence /clone=OX1_61_A11_A002 /clone_end=5' /gb=CN138063 /gi=45972186
Sbi.8066
WOUND1_59_F10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_59_F10_A002 5', mRNA sequence /clone=WOUND1_59_F10_A002 /clone_end=5' /gb=CN148942 /gi=45990343
Vvi.12591
CAbud0005_IF_G09 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0005_IF_G09 5', mRNA sequence /clone=CAbud0005_IF_G09 /clone_end=5' /gb=CF512901
Vvi.3225
CAB30005_Ib_Fb_C02 Cabernet Sauvignon Berry Stage I - CAB3 Vitis vinifera cDNA clone CAB30005_Ib_Fb_C02 5', mRNA sequence /clone=CAB30005_Ib_Fb_C02 /clone_end=5' /gb=CB974921

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G007987_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding146147.45.4e-11
Myb_DNA-binding6711251.82.6e-12

Sequences