Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G017142_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G017142_P02
Family
Alfin-like
3D structure (top 5)
1WEP 1WE9 2RI7 1WEE 2E6S
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.17411
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX822406
At.43821
Arabidopsis thaliana PHD finger family protein (AT5G05610) mRNA, complete cds /cds=p(163,888) /gb=NM_120643
Hv.10448
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129c12, mRNA sequence /gb=AK251639
Hv.10724
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.2273
EST1225172 MTY Medicago truncatula cDNA clone MTYAE43, mRNA sequence /clone=MTYAE43 /gb=DW016211
Mtr.2282
EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892
Os.51192
Oryza sativa Japonica Group cDNA clone:006-308-G07, full insert sequence /gb=AK061479
Os.59070
Oryza sativa Japonica Group cDNA, clone: J090069O18, full insert sequence /gb=AK288788
Pba.10516
WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199
Pba.3342
WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454
Ppa.10575
DC957474 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs24h08 3', mRNA sequence /clone=ppgs24h08 /clone_end=3' /gb=DC957474
Pth.10516
WS01117.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 3', mRNA sequence /clone=WS01117_L13 /clone_end=3' /gb=CV247299
Pth.15349
WS02510.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_N18 3', mRNA sequence /clone=WS02510_N18 /clone_end=3' /gb=CV240968
Pth.15907
WS02526.BR_H14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_H14 5', mRNA sequence /clone=WS02526_H14 /clone_end=5' /gb=DT479632
Pth.16891
Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076
Pth.3342
Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581
Sbi.6112
CCC1_34_A12.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_34_A12_A007 5', mRNA sequence /clone=CCC1_34_A12_A007 /clone_end=5' /gb=CD224562 /gi=30967996
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.7588
WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

Domain Architecture

PHD PF00628 GRMZM2G017142_P02
DomainStartEndBit scoreE-value
PHD10615644.83.4e-10
Alfin-like1071531184.5e-35

Sequences