Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G017268_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G017268_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

331771 Score: 1
357679 Score: 1

Carica papaya

evm.TU.supercontig_34.67 Score: 1

Zea mays

GRMZM2G017268_P02 Score: 1
GRMZM2G017268_P01 Score: 0.916

Physcomitrella patens

27442 Score: 1

Populus trichocarpa

209497 Score: 1
217476 Score: 1

Sorghum bicolor

4765085 Score: 1

Expression data

Expressed Sequence Tags

At.2261
Arabidopsis thaliana ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor (ATM4/ATMYB102) mRNA, complete cds /cds=p(109,1161) /gb=NM_118264
At.2669
Arabidopsis thaliana AtMYB41 (myb domain protein 41); DNA binding / transcription factor (AtMYB41) mRNA, complete cds /cds=p(1,849) /gb=NM_118951
At.48268
Arabidopsis thaliana AtMYB93 (myb domain protein 93); DNA binding / transcription factor (AtMYB93) mRNA, complete cds /cds=p(1,1098) /gb=NM_103190
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
At.5999
Arabidopsis thaliana putative transcription factor (MYB92) mRNA, complete cds /cds=p(260,1264) /gb=AF062916
At.69663
Arabidopsis thaliana MYB106 (myb domain protein 106); DNA binding / transcription factor (MYB106) mRNA, complete cds /cds=p(154,1320) /gb=NM_110979
At.9295
Arabidopsis thaliana AtMYB53 (myb domain protein 53); DNA binding / transcription factor (AtMYB53) mRNA, complete cds /cds=p(1,933) /gb=NM_125921
At.9932
Arabidopsis thaliana AtMYB9 (myb domain protein 9); DNA binding (AtMYB9) mRNA, complete cds /cds=p(326,1336) /gb=NM_203063
Hv.26413
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180h20, mRNA sequence /gb=AK248651
Hv.26842
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence /gb=AK248579
Mtr.19694
EST1224335 MTY Medicago truncatula cDNA clone MTYA430, mRNA sequence /clone=MTYA430 /gb=DW015374
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.70354
Oryza sativa (japonica cultivar-group) Os02g0754400 (Os02g0754400) mRNA, complete cds /cds=p(1,1134) /gb=NM_001054689
Os.78787
Oryza sativa (japonica cultivar-group) Os06g0221000 (Os06g0221000) mRNA, complete cds /cds=p(1,969) /gb=NM_001063709
Os.80488
Oryza sativa (japonica cultivar-group) Os08g0486300 (Os08g0486300) mRNA, complete cds /cds=p(1,1074) /gb=NM_001068630
Os.80847
Oryza sativa Japonica Group cDNA, clone: J090031E07, full insert sequence /gb=AK288415
Os.83361
Oryza sativa (japonica cultivar-group) Os02g0579300 (Os02g0579300) mRNA, complete cds /cds=p(1,1029) /gb=NM_001053764
Pba.3372
UM82TH11.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM82TH11 5', mRNA sequence /clone=UM82TH11 /clone_end=5' /gb=DN501301
Pth.3372
UM82TH11.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM82TH11 5', mRNA sequence /clone=UM82TH11 /clone_end=5' /gb=DN501301

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G017268_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding146152.12.1e-12
Myb_DNA-binding6711249.61.2e-11

Sequences