Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G025658_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G025658_P01
Family
Jumonji

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G11950.1 Score: 1
AT1G62310.1 Score: 1

Zea mays

GRMZM2G025658_P01 Score: 1
GRMZM2G080760_P02 Score: 1
GRMZM2G115717_P01 Score: 0.935
GRMZM2G080760_P01 Score: 0.908

Zea mays

GRMZM2G025658_P01 Score: 1
GRMZM2G115717_P01 Score: 0.905

Oryza sativa subsp. japonica

LOC_Os03g31594.1 Score: 1
LOC_Os03g31594.2 Score: 0.986

Populus trichocarpa

207634 Score: 1
207883 Score: 1

Zea mays

GRMZM2G025658_P01 Score: 1
GRMZM2G080760_P01 Score: 1
GRMZM2G080760_P02 Score: 0.987
GRMZM2G115717_P01 Score: 0.934

Sorghum bicolor

5048555 Score: 1

Expression data

Expressed Sequence Tags

Hv.4909
BJ484812 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56d17 3', mRNA sequence /clone=bah56d17 /clone_end=3' /gb=BJ484812
Mtr.22381
METAL93TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475949
Os.18195
Oryza sativa Japonica Group cDNA clone:J033020J08, full insert sequence /gb=AK073195
Os.50915
Oryza sativa Japonica Group cDNA clone:001-028-A06, full insert sequence /cds=p(115,1254) /gb=AK059445
Os.6505
Oryza sativa Japonica Group cDNA clone:001-023-A12, full insert sequence /gb=AK059145
Os.79778
Oryza sativa (japonica cultivar-group) Os02g0109400 (Os02g0109400) mRNA, complete cds /cds=p(1,2994) /gb=NM_001052179
Os.82084
T9 Water-deficit induced fragments in rice seminal root tips Oryza sativa cDNA clone T9, mRNA sequence /clone=T9 /gb=CB238462
Sbi.5380
POL1_69_A04.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_69_A04_A002 5', mRNA sequence /clone=POL1_69_A04_A002 /clone_end=5' /gb=CF481008 /gi=34509877
Vvi.11982
CAP0006_IVR_F05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0006_IVR_F05 3', mRNA sequence /clone=CAP0006_IVR_F05 /clone_end=3' /gb=CF519154
Vvi.4830
CAB2SG0004_IaR_D10 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0004_IaR_D10 3', mRNA sequence /clone=CAB2SG0004_IaR_D10 /clone_end=3' /gb=CB348379

Domain Architecture

AT_hook PF02178 GRMZM2G025658_P01
DomainStartEndBit scoreE-value
AT_hook314311.30.29
JmjC79391063.57.8e-16
AT_hook98699811.10.32

Sequences