Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G038066_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G038066_P02
Family
Alfin-like
3D structure (top 5)
1WEP 1WE9 2RI7 1WEU 1WEE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.43901
Arabidopsis thaliana PHD finger family protein (AT2G02470) mRNA, complete cds /cds=p(258,1028) /gb=NM_126302
At.68535
Arabidopsis thaliana PHD finger family protein (AT5G20510) mRNA, complete cds /cds=p(63,845) /gb=NM_122058
Hv.10448
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129c12, mRNA sequence /gb=AK251639
Hv.5712
HWM012cA.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cA.10, mRNA sequence /clone=HWM012cA.10 /gb=BE421625
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.13758
EST669369 MTUS Medicago truncatula cDNA clone MTUS-10F11, mRNA sequence /clone=MTUS-10F11 /gb=CF068648
Mtr.7514
Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-7 unknown mRNA /cds=m(170,940) /gb=BT052814
Os.17018
Oryza sativa Japonica Group cDNA clone:J033122M22, full insert sequence /cds=p(98,862) /gb=AK103215
Os.69757
Oryza sativa Japonica Group cDNA clone:J033046L10, full insert sequence /cds=p(85,888) /gb=AK073526
Os.9870
Oryza sativa Japonica Group cDNA clone:001-104-H11, full insert sequence /cds=p(76,912) /gb=AK109447
Pba.5364
WS02552.C21_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_L07 3', mRNA sequence /clone=WS02552_L07 /clone_end=3' /gb=DT492870
Pba.8619
WS02535.B21_F11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_F11 3', mRNA sequence /clone=WS02535_F11 /clone_end=3' /gb=DT488038
Pth.15907
WS02526.BR_H14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_H14 5', mRNA sequence /clone=WS02526_H14 /clone_end=5' /gb=DT479632
Pth.7589
WS02552.C21_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_L07 3', mRNA sequence /clone=WS02552_L07 /clone_end=3' /gb=DT492870
Pth.8619
WS02535.B21_F11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_F11 3', mRNA sequence /clone=WS02535_F11 /clone_end=3' /gb=DT488038
Sbi.15244
WOUND1_39_H12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_39_H12_A002 3', mRNA sequence /clone=WOUND1_39_H12_A002 /clone_end=3' /gb=CN146295 /gi=45986127
Vvi.19056
WIN058.C21_B14 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN058_B14 3', mRNA sequence /clone=WIN058_B14 /clone_end=3' /gb=EC938930
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.9805
CGF1000815_A04 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0006_IIF_A04 5', mRNA sequence /clone=CAST0006_IIF_A04 /clone_end=5' /gb=CF214311

Domain Architecture

PHD PF00628 GRMZM2G038066_P02
DomainStartEndBit scoreE-value
PHD11616652.31.9e-12
Alfin-like117163110.86.8e-33

Sequences