Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G038182_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G038182_P01
Family
Alfin-like
3D structure (top 5)
1WEP 1WE9 1WEU 2RI7 1WEE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.43901
Arabidopsis thaliana PHD finger family protein (AT2G02470) mRNA, complete cds /cds=p(258,1028) /gb=NM_126302
Hv.4874
HVSMEb0017L14f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0017L14f, mRNA sequence /clone=HVSMEb0017L14f /gb=BG300621
Hv.5712
HWM012cA.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cA.10, mRNA sequence /clone=HWM012cA.10 /gb=BE421625
Os.17018
Oryza sativa Japonica Group cDNA clone:J033122M22, full insert sequence /cds=p(98,862) /gb=AK103215
Os.2294
Oryza sativa (japonica cultivar-group) Os01g0887700 (Os01g0887700) mRNA, complete cds /cds=p(225,1043) /gb=NM_001051571
Os.9567
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA045I06, full insert sequence /gb=CT829243
Pba.5364
WS02552.C21_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_L07 3', mRNA sequence /clone=WS02552_L07 /clone_end=3' /gb=DT492870
Pba.8619
WS02535.B21_F11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_F11 3', mRNA sequence /clone=WS02535_F11 /clone_end=3' /gb=DT488038
Pth.15907
WS02526.BR_H14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_H14 5', mRNA sequence /clone=WS02526_H14 /clone_end=5' /gb=DT479632
Pth.7589
WS02552.C21_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_L07 3', mRNA sequence /clone=WS02552_L07 /clone_end=3' /gb=DT492870
Pth.8619
WS02535.B21_F11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_F11 3', mRNA sequence /clone=WS02535_F11 /clone_end=3' /gb=DT488038
Ptp.12044
T043D01.5pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T043D01 5', mRNA sequence /clone=T043D01 /clone_end=5' /gb=DN499312
Sbi.14682
OX1_2_F05.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_2_F05_A002 3', mRNA sequence /clone=OX1_2_F05_A002 /clone_end=3' /gb=CN131782 /gi=45961369
Sbi.15244
WOUND1_39_H12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_39_H12_A002 3', mRNA sequence /clone=WOUND1_39_H12_A002 /clone_end=3' /gb=CN146295 /gi=45986127
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.9805
CGF1000815_A04 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0006_IIF_A04 5', mRNA sequence /clone=CAST0006_IIF_A04 /clone_end=5' /gb=CF214311

Domain Architecture

PHD PF00628 GRMZM2G038182_P01
DomainStartEndBit scoreE-value
PHD9014048.72.2e-11
Alfin-like91137119.61.5e-35

Sequences