Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G039557_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G039557_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477086 Score: 1

Arabidopsis thaliana

AT1G79180.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g46780.1 Score: 1

Vitis vinifera

GSVIVP00035708001 Score: 1

Expression data

Expressed Sequence Tags

At.10900
53-L021131-065-005-E07-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 005-E07, mRNA sequence /clone=005-E07 /gb=DR750471
At.10919
Arabidopsis thaliana AtMYB72/MYB72 (myb domain protein 72); DNA binding / transcription factor (AtMYB72/MYB72) mRNA, complete cds /cds=p(1,891) /gb=NM_104495
At.2261
Arabidopsis thaliana ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor (ATM4/ATMYB102) mRNA, complete cds /cds=p(109,1161) /gb=NM_118264
At.9932
Arabidopsis thaliana AtMYB9 (myb domain protein 9); DNA binding (AtMYB9) mRNA, complete cds /cds=p(326,1336) /gb=NM_203063
Hv.26842
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence /gb=AK248579
Hv.27175
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence /gb=AK248649
Hv.4463
HC114B11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone HC114B11_SK.ab1 similar to myb protein homolog - rice gi|1946265|emb|CAA72217.1| (Y11414) myb [Oryza sativa], mRNA sequence /clone=HC114B11_SK.ab1 /gb=BM816803
Mtr.15864
Medicago truncatula clone MTYF9_FA_FB_FC1G-B-23 unknown mRNA /cds=p(109,885) /gb=BT052266
Mtr.4790
EST1227002 MTY Medicago truncatula cDNA clone MTYB151, mRNA sequence /clone=MTYB151 /gb=DW018041
Os.10172
CT857440 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRN106M14, mRNA sequence /clone=OSIGCRN106M14 /gb=CT857440
Os.10175
Oryza sativa (japonica cultivar-group) Os05g0429900 (Os05g0429900) mRNA, partial cds /cds=p(527,847) /gb=NM_001062156
Os.3387
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107G14, full insert sequence /gb=CT834744
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.47854
Oryza sativa Japonica Group cDNA clone:J023030I19, full insert sequence /gb=AK111720
Os.84391
Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence /gb=AK111960
Sbi.3364
WOUND1_65_D11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_65_D11_A002 5', mRNA sequence /clone=WOUND1_65_D11_A002 /clone_end=5' /gb=CN149909 /gi=45991895
Vvi.3225
CAB30005_Ib_Fb_C02 Cabernet Sauvignon Berry Stage I - CAB3 Vitis vinifera cDNA clone CAB30005_Ib_Fb_C02 5', mRNA sequence /clone=CAB30005_Ib_Fb_C02 /clone_end=5' /gb=CB974921

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G039557_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding166352.41.8e-12
Myb_DNA-binding6911443.21e-09

Sequences