Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G040924_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G040924_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

324558 Score: 1

Zea mays

GRMZM2G040924_P01 Score: 1
GRMZM2G086253_P01 Score: 1

Arabidopsis thaliana

AT3G61250.1 Score: 1

Zea mays

GRMZM2G040924_P01 Score: 1
GRMZM2G086253_P01 Score: 1

Carica papaya

evm.TU.supercontig_18.226 Score: 1

Zea mays

GRMZM2G040924_P01 Score: 1
GRMZM2G086253_P01 Score: 1
GRMZM2G111045_P01 Score: 1
GRMZM2G155033_P01 Score: 1

Zea mays

GRMZM2G040924_P01 Score: 1
GRMZM2G086253_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g42870.1 Score: 1

Populus trichocarpa

799038 Score: 1

Zea mays

GRMZM2G040924_P01 Score: 1
GRMZM2G086253_P01 Score: 1

Sorghum bicolor

5051550 Score: 1

Zea mays

GRMZM2G040924_P01 Score: 1
GRMZM2G050305_P01 Score: 1
GRMZM2G086253_P01 Score: 1

Zea mays

GRMZM2G040924_P01 Score: 1
GRMZM2G086253_P01 Score: 1

Vitis vinifera

GSVIVP00026803001 Score: 1

Expression data

Expressed Sequence Tags

At.10920
Arabidopsis thaliana AtMYB74 (myb domain protein 74); DNA binding / transcription factor (AtMYB74) mRNA, complete cds /cds=p(104,1078) /gb=NM_116749
At.48268
Arabidopsis thaliana AtMYB93 (myb domain protein 93); DNA binding / transcription factor (AtMYB93) mRNA, complete cds /cds=p(1,1098) /gb=NM_103190
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
At.69663
Arabidopsis thaliana MYB106 (myb domain protein 106); DNA binding / transcription factor (MYB106) mRNA, complete cds /cds=p(154,1320) /gb=NM_110979
At.9932
Arabidopsis thaliana AtMYB9 (myb domain protein 9); DNA binding (AtMYB9) mRNA, complete cds /cds=p(326,1336) /gb=NM_203063
Hv.26413
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180h20, mRNA sequence /gb=AK248651
Hv.26842
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence /gb=AK248579
Mtr.19694
EST1224335 MTY Medicago truncatula cDNA clone MTYA430, mRNA sequence /clone=MTYA430 /gb=DW015374
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.70354
Oryza sativa (japonica cultivar-group) Os02g0754400 (Os02g0754400) mRNA, complete cds /cds=p(1,1134) /gb=NM_001054689
Os.78787
Oryza sativa (japonica cultivar-group) Os06g0221000 (Os06g0221000) mRNA, complete cds /cds=p(1,969) /gb=NM_001063709
Os.80488
Oryza sativa (japonica cultivar-group) Os08g0486300 (Os08g0486300) mRNA, complete cds /cds=p(1,1074) /gb=NM_001068630
Os.80737
Oryza sativa (japonica cultivar-group) Os06g0112700 (Os06g0112700) mRNA, complete cds /cds=p(1,1104) /gb=NM_001063130
Os.80847
Oryza sativa Japonica Group cDNA, clone: J090031E07, full insert sequence /gb=AK288415
Os.83361
Oryza sativa (japonica cultivar-group) Os02g0579300 (Os02g0579300) mRNA, complete cds /cds=p(1,1029) /gb=NM_001053764
Pba.3372
UM82TH11.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM82TH11 5', mRNA sequence /clone=UM82TH11 /clone_end=5' /gb=DN501301
Pth.11166
Populus trichocarpa clone WS01231_B05 unknown mRNA /cds=p(113,1009) /gb=EF147441
Pth.12469
UM45TE12.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM45TE12 5', mRNA sequence /clone=UM45TE12 /clone_end=5' /gb=DN500996
Pth.3372
UM82TH11.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM82TH11 5', mRNA sequence /clone=UM82TH11 /clone_end=5' /gb=DN501301

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G040924_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding156252.41.7e-12
Myb_DNA-binding68113491.8e-11

Sequences