Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G049539_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G049539_P01
Family
SWI/SNF-BAF60b
3D structure (top 5)
2BZE 1V32 1WH2 2Z5S 1UHR
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os09g36090.1 Score: 1

Sorghum bicolor

5053693 Score: 1

Expression data

Expressed Sequence Tags

Hv.25150
BJ471970 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal28n18 5', mRNA sequence /clone=baal28n18 /clone_end=5' /gb=BJ471970
Mtr.13307
EST647475 HOGA Medicago truncatula cDNA clone HOGA-32C15, mRNA sequence /clone=HOGA-32C15 /gb=CB894683
Os.81148
CR281400 Oryza sativa library (Han B) Oryza sativa cDNA clone y714d11p5, mRNA sequence /clone=y714d11p5 /gb=CR281400
Os.82116
OSIIEb05F08.r OSIIEb Oryza sativa (indica cultivar-group) cDNA clone OSIIEb05F08 3', mRNA sequence /clone=OSIIEb05F08 /clone_end=3' /gb=CB629246
Os.86087
NEW_RNG123-D03 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE590805
Os.96422
SSH001438 Salt stress SSH library Oryza sativa (indica cultivar-group) cDNA, mRNA sequence /gb=EX451381
Sbi.11090
DG1_7_G08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW677423

Domain Architecture

SWIB PF02201 GRMZM2G049539_P01
DomainStartEndBit scoreE-value
SWIB71879386.41e-22
Plus-3856963151.52.5e-42
GYF1193124839.31.6e-08

Sequences