Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G050550_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G050550_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

481200 Score: 1

Arabidopsis thaliana

AT2G23290.1 Score: 1
AT4G37260.1 Score: 1

Carica papaya

evm.TU.supercontig_6.96 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g01960.1 Score: 1

Populus trichocarpa

218492 Score: 1

Vitis vinifera

GSVIVP00014887001 Score: 1

Expression data

Expressed Sequence Tags

At.22600
Arabidopsis thaliana MYB77; DNA binding / transcription factor (MYB77) mRNA, complete cds /cds=p(56,961) /gb=NM_114866
Mtr.2832
META684TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474566
Mtr.5672
Medicago truncatula clone MTYFD_FE_FF_FG1G-K-6 unknown mRNA /cds=p(12,611) /gb=BT052486
Os.4945
CT863686 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG5536, mRNA sequence /clone=CONTIG5536 /gb=CT863686
Ppa.3385
BY947177 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS021P06 5', mRNA sequence /clone=PPLS021P06 /clone_end=5' /gb=BY947177
Pth.12278
V012F11.5pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V012F11 5', mRNA sequence /clone=V012F11 /clone_end=5' /gb=DN501651
Sbi.1608
WOUND1_25_B02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_25_B02_A002 5', mRNA sequence /clone=WOUND1_25_B02_A002 /clone_end=5' /gb=CN144878 /gi=45983672
Vvi.17326
S8B05708 Fruits Veraison (VvS8) Vitis vinifera cDNA clone S8B05708, mRNA sequence /clone=S8B05708 /gb=EE097224
Vvi.20351
WIN0511.C21.1_D17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0511_D17 3', mRNA sequence /clone=WIN0511_D17 /clone_end=3' /gb=EC936039
Vvi.436
Vitis vinifera sucrose responsive element binding protein (SREBP) mRNA, complete cds /cds=p(54,992) /gb=AY953543

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G050550_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding216758.62.4e-14
Myb_DNA-binding7311849.81e-11

Sequences