Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G052416_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G052416_P01
Family
SWI/SNF-BAF60b
3D structure (top 5)
1UHR 1V31 1V32 2Z5S
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488249 Score: 1

Arabidopsis thaliana

AT5G14170.1 Score: 1

Cyanidioschyzon merolae

CMT195C Score: 1

Chlorella sp. NC64A

57254 Score: 1

Carica papaya

evm.TU.supercontig_13.119 Score: 1

Chlamydomonas reinhardtii

8547 Score: 1

Coccomyxa sp. C-169

74903 Score: 1

Micromonas pusilla CCMP1545

3054 Score: 1

Micromonas sp. RCC299

86659 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g31320.1 Score: 1

Physcomitrella patens

113811 Score: 1

Populus trichocarpa

742845 Score: 1

Sorghum bicolor

5034745 Score: 1

Selaginella moellendorffii

43289 Score: 1

Vitis vinifera

GSVIVP00037842001 Score: 1

Expression data

Expressed Sequence Tags

At.45849
Arabidopsis thaliana SWIB complex BAF60b domain-containing protein (AT3G01890) mRNA, complete cds /cds=p(318,1694) /gb=NM_111055
At.6512
Arabidopsis thaliana CHC1 (CHC1) mRNA, complete cds /cds=p(95,1699) /gb=NM_121421
Hv.14040
HDP13D11T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP13D11, mRNA sequence /clone=HDP13D11 /gb=EX582920
Os.59109
Oryza sativa Japonica Group cDNA clone:002-140-E07, full insert sequence /gb=AK108218
Pba.1671
WS02511.B21_K19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02511_K19 3', mRNA sequence /clone=WS02511_K19 /clone_end=3' /gb=CV241261
Ppa.15799
Physcomitrella patens subsp. patens SWI/SNF transcription activation complex subunit (CHC1502) mRNA, complete cds /cds=p(1,1422) /gb=XM_001780121
Ptp.12715
N024B07.5pR Populus bark cDNA library Populus tremula x Populus tremuloides cDNA clone N024B07 5', mRNA sequence /clone=N024B07 /clone_end=5' /gb=DN495180
Sbi.10454
OX1_24_F06.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_24_F06_A002 5', mRNA sequence /clone=OX1_24_F06_A002 /clone_end=5' /gb=CN139887 /gi=45975491
Vvi.12419
WIN0543.C21_F04 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0543_F04 3', mRNA sequence /clone=WIN0543_F04 /clone_end=3' /gb=EC947984

Domain Architecture

SWIB PF02201 GRMZM2G052416_P01
DomainStartEndBit scoreE-value
SWIB31138691.62.7e-24

Sequences