Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G056986_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G056986_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1OFC 1GV2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.27639
Arabidopsis thaliana myb family transcription factor (AT5G01200) mRNA, complete cds /cds=p(1,804) /gb=NM_120198
At.32952
Arabidopsis thaliana myb family transcription factor (AT5G05790) mRNA, complete cds /cds=p(358,1191) /gb=NM_120661
At.46819
Arabidopsis thaliana myb family transcription factor (AT2G38090) mRNA, complete cds /cds=p(568,1464) /gb=NM_129365
At.7757
Arabidopsis thaliana myb family transcription factor (AT5G58900) mRNA, complete cds /cds=p(668,1534) /gb=NM_125280
At.8762
Arabidopsis thaliana myb family transcription factor (AT5G08520) mRNA, complete cds /cds=p(622,1518) /gb=NM_120937
Mtr.1448
Medicago truncatula clone MTYF9_FA_FB_FC1G-K-6 unknown mRNA /cds=p(950,1648) /gb=BT051984
Os.1619
Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence /cds=p(288,1172) /gb=AK067964
Os.18392
Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence /cds=p(396,1343) /gb=AK068138
Os.42406
Oryza sativa Japonica Group cDNA clone:001-030-C10, full insert sequence /gb=AK111988
Pba.5711
WS02532.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_E19 3', mRNA sequence /clone=WS02532_E19 /clone_end=3' /gb=DT486921
Pba.8945
WS02522.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B09 3', mRNA sequence /clone=WS02522_B09 /clone_end=3' /gb=DT483252
Pth.5711
WS02532.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_E19 3', mRNA sequence /clone=WS02532_E19 /clone_end=3' /gb=DT486921
Pth.8945
WS02522.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B09 3', mRNA sequence /clone=WS02522_B09 /clone_end=3' /gb=DT483252
Sbi.18629
RHOH1_38_E10.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_38_E10_A002 5', mRNA sequence /clone=RHOH1_38_E10_A002 /clone_end=5' /gb=CN130005 /gi=45958162
Vvi.19568
WIN1138.C21_J18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_J18 3', mRNA sequence /clone=WIN1138_J18 /clone_end=3' /gb=EC990110
Vvi.23727
sT7aVVM004H08026 VVM Vitis vinifera cDNA clone VVM004H08026 5' similar to emb_CAO48712.1 unnamed protein product [Vitis vinifera]. Expect = 2e-120, mRNA sequence /clone=VVM004H08026 /clone_end=5' /gb=FC062566
Vvi.5667
CAP0001_IVF_H04 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0001_IVF_H04 5', mRNA sequence /clone=CAP0001_IVF_H04 /clone_end=5' /gb=CF515425

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G056986_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding318038.62.5e-08
Myb_DNA-binding13418154.54.1e-13

Sequences