Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G057027_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G057027_P02
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G53200.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g19120.1 Score: 1

Sorghum bicolor

4777720 Score: 1

Expression data

Expressed Sequence Tags

At.10899
Arabidopsis thaliana ATMYB12/MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor (ATMYB12/MYB12) mRNA, complete cds /cds=p(102,1217) /gb=NM_130314
At.20521
Arabidopsis thaliana MYB4 (myb domain protein 4); transcription factor (MYB4) mRNA, complete cds /cds=p(316,1164) /gb=NM_120023
At.23277
Arabidopsis thaliana MYB3 (myb domain protein 3); DNA binding / transcription factor (MYB3) mRNA, complete cds /cds=p(95,868) /gb=NM_102111
At.26279
Arabidopsis thaliana putative transcription factor (At5g49330) mRNA, complete cds /cds=p(86,1114) /gb=AF371977
At.4218
Arabidopsis thaliana ATMYB6 (MYB DOMAIN PROTEIN 6); DNA binding / transcription factor (ATMYB6) mRNA, complete cds /cds=p(54,764) /gb=NM_117014
At.47205
Arabidopsis thaliana AtMYB11 (myb domain protein 11); DNA binding / transcription factor (AtMYB11) mRNA, complete cds /cds=p(1,1032) /gb=NM_116126
At.5349
Arabidopsis thaliana MYB7 (myb domain protein 7); DNA binding / transcription factor (MYB7) mRNA, complete cds /cds=p(31,840) /gb=NM_127224
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
Hv.12535
HV_CEb0020E02f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0020E02f, mRNA sequence /clone=HV_CEb0020E02f /gb=BE558747
Hv.4463
HC114B11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone HC114B11_SK.ab1 similar to myb protein homolog - rice gi|1946265|emb|CAA72217.1| (Y11414) myb [Oryza sativa], mRNA sequence /clone=HC114B11_SK.ab1 /gb=BM816803
Mtr.15864
Medicago truncatula clone MTYF9_FA_FB_FC1G-B-23 unknown mRNA /cds=p(109,885) /gb=BT052266
Mtr.9208
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-10 unknown mRNA /cds=m(91,948) /gb=BT052056
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.86695
Oryza sativa Japonica Group cDNA, clone: J090061C22, full insert sequence /gb=AK288699
Sbi.3364
WOUND1_65_D11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_65_D11_A002 5', mRNA sequence /clone=WOUND1_65_D11_A002 /clone_end=5' /gb=CN149909 /gi=45991895
Vvi.12591
CAbud0005_IF_G09 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0005_IF_G09 5', mRNA sequence /clone=CAbud0005_IF_G09 /clone_end=5' /gb=CF512901
Vvi.17639
Vitis vinifera Myb transcription factor (MybCs1) mRNA, complete cds /cds=p(40,1002) /gb=AY555190
Vvi.3370
Vitis vinifera MYB5b mRNA, complete cds /cds=p(31,966) /gb=AY899404

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G057027_P02
DomainStartEndBit scoreE-value
Myb_DNA-binding146151.63e-12
Myb_DNA-binding6711251.43.5e-12
P_C113335509.73.8e-150

Sequences