Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G060478_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G060478_P01
Family
SET
3D structure (top 5)
2PB7 2R3A 1ML9 3F9X 2RFI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

895166 Score: 1

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Carica papaya

evm.TU.supercontig_33.185 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g38900.1 Score: 1

Populus trichocarpa

758229 Score: 1

Sorghum bicolor

4760357 Score: 1

Zea mays

GRMZM2G060478_P01 Score: 1
GRMZM2G139710_P01 Score: 1
GRMZM2G139710_P02 Score: 1

Vitis vinifera

GSVIVP00023351001 Score: 1
GSVIVP00033960001 Score: 1

Expression data

Expressed Sequence Tags

At.11687
Arabidopsis thaliana SUVH3 (SU(VAR)3-9 HOMOLOG 3) (SUVH3) mRNA, complete cds /cds=p(212,2221) /gb=NM_105968
At.8375
Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds /cds=p(363,2375) /gb=AF344444
Hv.11852
HVSMEi0002N21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEi0002N21f, mRNA sequence /clone=HVSMEi0002N21f /gb=BG365483
Hv.2567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf52h10, mRNA sequence /gb=AK249824
Os.11922
Oryza sativa Japonica Group cDNA clone:J023004N15, full insert sequence /cds=p(280,2298) /gb=AK069035
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.35901
Oryza sativa Japonica Group cDNA clone:J013002H03, full insert sequence /gb=AK065227
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

AT_hook PF02178 GRMZM2G060478_P01
DomainStartEndBit scoreE-value
AT_hook15116311.60.27
AT_hook2142269.70.56
AT_hook29430610.80.36
AT_hook32433611.90.23
YDG_SRA398548326.26.8e-95
Pre-SET575675149.79.1e-42
SET6778301952.1e-55

Sequences