Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G085689_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G085689_P02
Family
SNF2
3D structure (top 5)
2FWR 3DMQ 1Z3I 1Z5Z 1Z63
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478644 Score: 1

Zea mays

GRMZM2G085689_P02 Score: 1
GRMZM2G085689_P03 Score: 0.904

Arabidopsis thaliana

AT3G12810.1 Score: 1

Zea mays

GRMZM2G085689_P02 Score: 1
GRMZM2G085689_P03 Score: 0.904
GRMZM2G085689_P01 Score: 0.901

Cyanidioschyzon merolae

CMT353C Score: 1

Zea mays

GRMZM2G085689_P02 Score: 1
GRMZM2G085689_P03 Score: 0.938
GRMZM2G085689_P01 Score: 0.936

Micromonas sp. RCC299

104935 Score: 1
104934 Score: 0.905

Zea mays

GRMZM2G085689_P01 Score: 1
GRMZM2G085689_P03 Score: 1
GRMZM2G085689_P02 Score: 0.981

Physcomitrella patens

30018 Score: 1

Zea mays

GRMZM2G085689_P01 Score: 1
GRMZM2G085689_P03 Score: 1
GRMZM2G085689_P02 Score: 0.977

Populus trichocarpa

553466 Score: 1

Zea mays

GRMZM2G085689_P02 Score: 1
GRMZM2G085689_P03 Score: 0.911
GRMZM2G085689_P01 Score: 0.908

Expression data

Expressed Sequence Tags

At.39549
Arabidopsis thaliana PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase (PIE1) mRNA, complete cds /cds=p(595,6762) /gb=NM_112117
At.40578
Arabidopsis thaliana ATCHR12; ATP binding / DNA binding (ATCHR12) mRNA, complete cds /cds=p(1,3399) /gb=NM_111475
At.40665
Arabidopsis thaliana CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase (CHR5) mRNA, complete cds /cds=p(344,5518) /gb=NM_126926
At.43995
Arabidopsis thaliana homeotic gene regulator, putative (AT5G19310) mRNA, complete cds /cds=p(128,3322) /gb=NM_121936
Cre.13564
Chlamydomonas reinhardtii strain CC-503 cw92 mt+ /cds=p(98,3280) /gb=XM_001690973
Os.17548
Oryza sativa Japonica Group cDNA clone:J023010H23, full insert sequence /gb=AK120785
Os.52584
Oryza sativa Japonica Group cDNA clone:J013133N02, full insert sequence /gb=AK068173
Sbi.5953
POL1_53_G03.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_53_G03_A002 3', mRNA sequence /clone=POL1_53_G03_A002 /clone_end=3' /gb=CF488968 /gi=34517837

Domain Architecture

ResIII PF04851 GRMZM2G085689_P02
DomainStartEndBit scoreE-value
ResIII4986628.61e-05
SNF2_N504790396.16.1e-116
Helicase_C10731151102.11.9e-27

Sequences