Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G088189_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G088189_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os02g02370.1 Score: 1

Sorghum bicolor

4881757 Score: 1

Expression data

Expressed Sequence Tags

At.227
Arabidopsis thaliana ATMYB4 (myb domain protein 4); transcription repressor (ATMYB4) mRNA, complete cds /cds=p(131,1189) /gb=NM_180548
At.28678
61-L022342-065-009-E08-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 009-E08, mRNA sequence /clone=009-E08 /gb=DR750347
At.3837
Arabidopsis thaliana MYB55 (myb domain protein 55); DNA binding / transcription factor (MYB55) mRNA, complete cds /cds=p(165,1175) /gb=NM_116398
Hv.10975
BNEL42e10 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL42e10 5' similar to OSJNBb0039L24.8, mRNA sequence /clone=BNEL42e10 /clone_end=5' /gb=CV058923
Hv.20297
BNEL83e5 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL83e5 5' similar to OSJNBb0039L24.8, mRNA sequence /clone=BNEL83e5 /clone_end=5' /gb=CV062831
Hv.6949
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88d11, mRNA sequence /gb=AK250733
Mtr.15761
Medicago truncatula clone MTYFL_FM_FN_FO1G-C-4 unknown mRNA /cds=p(49,1134) /gb=BT052924
Mtr.16033
EST5313075 GESD Medicago truncatula cDNA clone pGESD10F11 5' end, mRNA sequence /clone=pGESD10F11 /clone_end=5' /gb=BI311325
Mtr.19352
Medicago truncatula clone MTYFL_FM_FN_FO1G-P-4 unknown mRNA /cds=m(263,1366) /gb=BT052849
Os.49830
Oryza sativa Japonica Group cDNA clone:J013114D05, full insert sequence /cds=p(219,1298) /gb=AK111808
Os.54935
Oryza sativa Japonica Group cDNA clone:002-124-C09, full insert sequence /cds=p(189,1010) /gb=AK107135
Os.79776
Oryza sativa (japonica cultivar-group) Os02g0114800 (Os02g0114800) mRNA, complete cds /cds=p(1,894) /gb=NM_001052206
Os.9514
Oryza sativa Japonica Group cDNA clone:J023018J24, full insert sequence /cds=p(1926,3209) /gb=AK111821
Sbi.12634
OX1_24_B03.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_24_B03_A002 5', mRNA sequence /clone=OX1_24_B03_A002 /clone_end=5' /gb=CN139844 /gi=45975410
Sbi.2589
ANR1_9_D06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_9_D06_A002 5', mRNA sequence /clone=ANR1_9_D06_A002 /clone_end=5' /gb=CX608930 /gi=57807650

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G088189_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding156248.62.4e-11
Myb_DNA-binding68113514.5e-12

Sequences