Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G096399_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G096399_P01
Family
C3H
3D structure (top 5)
2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480442 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Arabidopsis thaliana

AT2G20280.1 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Chlorella sp. NC64A

134088 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Carica papaya

evm.TU.supercontig_2216.1 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Chlamydomonas reinhardtii

146239 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Coccomyxa sp. C-169

63630 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Micromonas pusilla CCMP1545

4866 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Micromonas sp. RCC299

79899 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Ostreococcus lucimarinus

38590 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g61830.1 Score: 1

Ostreococcus tauri

17276 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Physcomitrella patens

4327 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Populus trichocarpa

820289 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Sorghum bicolor

4753849 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Selaginella moellendorffii

80672 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Vitis vinifera

GSVIVP00018279001 Score: 1

Expression data

Expressed Sequence Tags

At.39718
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G20280) mRNA, complete cds /cds=p(1,1116) /gb=NM_127587
Cre.15550
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_146239) mRNA, complete cds /cds=p(1,1194) /gb=XM_001689400
Hv.5360
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence /gb=AK250766
Os.32086
Oryza sativa Japonica Group cDNA clone:J033050C24, full insert sequence /gb=AK101559
Pba.7160
WS02533.B21_P10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P10 3', mRNA sequence /clone=WS02533_P10 /clone_end=3' /gb=DT487535
Ppa.11399
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_24014) mRNA, partial cds /cds=p(1,1035) /gb=XM_001754460
Ppa.8194
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_4327) mRNA, partial cds /cds=p(1,1071) /gb=XM_001778100
Pth.13590
WS0168.B21_G13 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_G13 3', mRNA sequence /clone=WS0168_G13 /clone_end=3' /gb=CV227854
Pth.7160
WS02533.B21_P10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P10 3', mRNA sequence /clone=WS02533_P10 /clone_end=3' /gb=DT487535
Ptp.11119
A056P09.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A056P09 3', mRNA sequence /clone=A056P09 /clone_end=3' /gb=CK088504
Sbi.2541
HS1_16_F07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_16_F07_A012 3', mRNA sequence /clone=HS1_16_F07_A012 /clone_end=3' /gb=CD212708 /gi=30950057
Vca.5590
CBHA10816.rev CBHA Volvox carteri f. nagariensis induced male 69-1b, 2kb neb notI Volvox carteri f. nagariensis cDNA clone CBHA10816 3', mRNA sequence /clone=CBHA10816 /clone_end=3' /gb=FD842318

Domain Architecture

zf-CCCH PF00642 GRMZM2G096399_P01
DomainStartEndBit scoreE-value
zf-CCCH9111625.10.00029

Sequences