Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G097289_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G097289_P02
Family
SNF2
3D structure (top 5)
2OCA 1WP9 2DB3 2I4I 1HV8
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

56509 Score: 1

Zea mays

GRMZM2G097289_P02 Score: 1
GRMZM2G097289_P03 Score: 0.941
GRMZM2G102625_P01 Score: 0.911

Carica papaya

evm.TU.supercontig_1278.1 Score: 1

Zea mays

GRMZM2G097289_P03 Score: 1
GRMZM2G097289_P02 Score: 0.921

Coccomyxa sp. C-169

26084 Score: 1

Zea mays

GRMZM2G097289_P01 Score: 1
GRMZM2G097289_P02 Score: 0.99
GRMZM2G102625_P01 Score: 0.913

Ostreococcus lucimarinus

35598 Score: 1

Zea mays

GRMZM2G097289_P01 Score: 1
GRMZM2G097289_P02 Score: 0.992
GRMZM2G102625_P01 Score: 0.932
GRMZM2G097289_P03 Score: 0.905

Expression data

Expressed Sequence Tags

At.40578
Arabidopsis thaliana ATCHR12; ATP binding / DNA binding (ATCHR12) mRNA, complete cds /cds=p(1,3399) /gb=NM_111475
At.43995
Arabidopsis thaliana homeotic gene regulator, putative (AT5G19310) mRNA, complete cds /cds=p(128,3322) /gb=NM_121936
Hv.10685
AU252285 salt-stressed barley root cDNA Hordeum vulgare subsp. vulgare cDNA clone BR-S22 similar to putative transcription regulator, mRNA sequence /clone=BR-S22 /gb=AU252285
Os.52584
Oryza sativa Japonica Group cDNA clone:J013133N02, full insert sequence /gb=AK068173

Domain Architecture

SNF2_N PF00176 GRMZM2G097289_P02
DomainStartEndBit scoreE-value
SNF2_N119405453.33.7e-133
Helicase_C457536102.81.1e-27

Sequences