Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G102625_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G102625_P01
Family
SNF2
3D structure (top 5)
1Z63 1WP9 3DMQ 2FWR 1Z3I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

871950 Score: 1

Arabidopsis thaliana

AT3G06010.1 Score: 1

Cyanidioschyzon merolae

CMH195C Score: 1

Chlorella sp. NC64A

56509 Score: 1

Zea mays

GRMZM2G097289_P02 Score: 1
GRMZM2G097289_P03 Score: 0.941
GRMZM2G102625_P01 Score: 0.911

Coccomyxa sp. C-169

26084 Score: 1

Zea mays

GRMZM2G097289_P01 Score: 1
GRMZM2G097289_P02 Score: 0.99
GRMZM2G102625_P01 Score: 0.913

Micromonas sp. RCC299

56143 Score: 1

Ostreococcus lucimarinus

35598 Score: 1

Zea mays

GRMZM2G097289_P01 Score: 1
GRMZM2G097289_P02 Score: 0.992
GRMZM2G102625_P01 Score: 0.932
GRMZM2G097289_P03 Score: 0.905

Oryza sativa subsp. japonica

LOC_Os05g05230.1 Score: 1

Physcomitrella patens

40536 Score: 1

Populus trichocarpa

419389 Score: 1

Sorghum bicolor

5060089 Score: 1

Selaginella moellendorffii

102849 Score: 1

Vitis vinifera

GSVIVP00019937001 Score: 1

Expression data

Expressed Sequence Tags

At.40578
Arabidopsis thaliana ATCHR12; ATP binding / DNA binding (ATCHR12) mRNA, complete cds /cds=p(1,3399) /gb=NM_111475
At.43995
Arabidopsis thaliana homeotic gene regulator, putative (AT5G19310) mRNA, complete cds /cds=p(128,3322) /gb=NM_121936
Hv.10685
AU252285 salt-stressed barley root cDNA Hordeum vulgare subsp. vulgare cDNA clone BR-S22 similar to putative transcription regulator, mRNA sequence /clone=BR-S22 /gb=AU252285
Os.52584
Oryza sativa Japonica Group cDNA clone:J013133N02, full insert sequence /gb=AK068173

Domain Architecture

ResIII PF04851 GRMZM2G102625_P01
DomainStartEndBit scoreE-value
ResIII2253901.54e-05
SNF2_N231517452.85.2e-133
Helicase_C569648102.41.5e-27

Sequences