Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G105004_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G105004_P01
Family
RWP-RK
3D structure (top 5)
1IP9 1WJ6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

483462 Score: 1

Zea mays

GRMZM2G071422_P01 Score: 1
GRMZM2G071422_P02 Score: 1
GRMZM2G105004_P01 Score: 1
GRMZM2G105004_P02 Score: 0.984

Arabidopsis thaliana

AT3G59580.1 Score: 1
AT3G59580.2 Score: 1

Zea mays

GRMZM2G071422_P01 Score: 1
GRMZM2G105004_P01 Score: 1
GRMZM2G105004_P02 Score: 0.983
GRMZM2G071422_P02 Score: 0.976

Carica papaya

evm.TU.supercontig_9.317 Score: 1

Zea mays

GRMZM2G071422_P01 Score: 1
GRMZM2G105004_P01 Score: 1
GRMZM2G105004_P02 Score: 0.982
GRMZM2G071422_P02 Score: 0.975

Zea mays

GRMZM2G071422_P01 Score: 1
GRMZM2G105004_P01 Score: 1
GRMZM2G105004_P02 Score: 0.968
GRMZM2G071422_P02 Score: 0.955

Oryza sativa subsp. japonica

LOC_Os04g41850.1 Score: 1

Populus trichocarpa

216379 Score: 1
292822 Score: 1

Zea mays

GRMZM2G012986_P02 Score: 1
GRMZM2G031398_P02 Score: 1
GRMZM2G071422_P01 Score: 1
GRMZM2G105004_P01 Score: 1
GRMZM2G012986_P01 Score: 0.985
GRMZM2G031398_P01 Score: 0.985
GRMZM2G105004_P02 Score: 0.983
GRMZM2G071422_P02 Score: 0.975

Sorghum bicolor

4828749 Score: 1

Zea mays

GRMZM2G071422_P01 Score: 1
GRMZM2G105004_P01 Score: 1
GRMZM2G105004_P02 Score: 0.908

Zea mays

GRMZM2G071422_P02 Score: 1
GRMZM2G071422_P01 Score: 0.957
GRMZM2G105004_P01 Score: 0.957
GRMZM2G105004_P02 Score: 0.942

Vitis vinifera

GSVIVP00034609001 Score: 1

Expression data

Expressed Sequence Tags

Hv.16919
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33g13, mRNA sequence /gb=AK249277
Hv.1839
HWM008.E08 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM008.E08, mRNA sequence /clone=HWM008.E08 /gb=BE421363
Os.10084
Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence /gb=AK064859
Os.17377
Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence /cds=p(671,3481) /gb=AK103154
Sbi.11733
DG1_146_G11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE357033
Sbi.6918
RHOH1_38_G10.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_38_G10_A002 5', mRNA sequence /clone=RHOH1_38_G10_A002 /clone_end=5' /gb=CN130027 /gi=45958205

Domain Architecture

RWP-RK PF02042 GRMZM2G105004_P01
DomainStartEndBit scoreE-value
RWP-RK566617104.53.6e-28
PB184292478.32.7e-20

Sequences