Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G107491_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G107491_P01
Family
C3H
3D structure (top 5)
1M9O 2E5S 2RHK 2CQE 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G041825_P01 Score: 1
GRMZM2G107491_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g68860.1 Score: 1

Sorghum bicolor

4754425 Score: 1

Zea mays

GRMZM2G041825_P01 Score: 1
GRMZM2G107491_P01 Score: 1

Selaginella moellendorffii

45667 Score: 1

Zea mays

GRMZM2G041825_P01 Score: 1
GRMZM2G107491_P01 Score: 1
GRMZM2G041825_P02 Score: 0.905
GRMZM2G107491_P02 Score: 0.905

Expression data

Expressed Sequence Tags

At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Hv.8311
HVSMEm0009K09f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEm0009K09f, mRNA sequence /clone=HVSMEm0009K09f /gb=BI953054
Mtr.10625
EST1225273 MTY Medicago truncatula cDNA clone MTYAF64, mRNA sequence /clone=MTYAF64 /gb=DW016312
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102
Sbi.1345
NIT1_29_E12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_29_E12_A002 5', mRNA sequence /clone=NIT1_29_E12_A002 /clone_end=5' /gb=CF434363 /gi=34447064
Vvi.9025
VV_PEd0014f11.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240837

Domain Architecture

zf-CCCH PF00642 GRMZM2G107491_P01
DomainStartEndBit scoreE-value
zf-CCCH709642.61.5e-09
zf-CCCH11514142.22e-09
zf-CCCH16118739.41.4e-08
zf-CCCH31333946.88.5e-11
zf-CCCH35938548.23.3e-11

Sequences