Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G108959_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G108959_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G010730_P01 Score: 1
GRMZM2G108959_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g35390.1 Score: 1

Populus trichocarpa

242022 Score: 1

Zea mays

GRMZM2G010730_P01 Score: 1
GRMZM2G108959_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10902
Arabidopsis thaliana MYB30 (myb domain protein 30); DNA binding / transcription factor (MYB30) mRNA, complete cds /cds=p(287,1258) /gb=NM_113812
At.10912
Arabidopsis thaliana MYB60 (myb domain protein 60); DNA binding / transcription factor (MYB60) mRNA, complete cds /cds=p(67,909) /gb=NM_100755
At.21591
Arabidopsis thaliana putative transcription factor (MYB94) mRNA, complete cds /cds=p(195,1202) /gb=AF062918
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
At.9303
Arabidopsis thaliana MYB96 (myb domain protein 96); DNA binding / transcription factor (MYB96) mRNA, complete cds /cds=p(244,1302) /gb=NM_125641
Mtr.17795
NF093A01PL1F1003 Phosphate starved leaf Medicago truncatula cDNA clone NF093A01PL 5', mRNA sequence /clone=NF093A01PL /clone_end=5' /gb=BI263788
Mtr.19694
EST1224335 MTY Medicago truncatula cDNA clone MTYA430, mRNA sequence /clone=MTYA430 /gb=DW015374
Os.25588
Oryza sativa (indica cultivar-group) putative MYB transcription factor mRNA, complete cds /cds=p(115,1140) /gb=EU009207
Os.3389
O.sativa mRNA for myb factor, 1308 bp /cds=p(115,1050) /gb=Y11352
Os.47511
Oryza sativa (japonica cultivar-group) Os03g0378500 (Os03g0378500) mRNA, complete cds /cds=p(1,924) /gb=NM_001056767
Os.48085
Oryza sativa (japonica cultivar-group) Os09g0414300 (Os09g0414300) mRNA, complete cds /cds=p(1,966) /gb=NM_001069702
Os.57062
Oryza sativa Japonica Group cDNA clone:002-172-B09, full insert sequence /cds=p(191,1183) /gb=AK110844
Os.80554
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence /gb=CT837778
Os.83361
Oryza sativa (japonica cultivar-group) Os02g0579300 (Os02g0579300) mRNA, complete cds /cds=p(1,1029) /gb=NM_001053764
Pth.10610
WS02529.BR_L05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_L05 5', mRNA sequence /clone=WS02529_L05 /clone_end=5' /gb=DT480711
Pth.11166
Populus trichocarpa clone WS01231_B05 unknown mRNA /cds=p(113,1009) /gb=EF147441
Vvi.14906
CGF1000811_E08 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IIIF_E08 5', mRNA sequence /clone=CAST0007_IIIF_E08 /clone_end=5' /gb=CF214013
Vvi.20927
WIN072.C21_P10 Cab Sauv pericarp normalized (WIN07) Vitis vinifera cDNA clone WIN072_P10 3', mRNA sequence /clone=WIN072_P10 /clone_end=3' /gb=EC958907
Vvi.24356
Vitis vinifera R2R3 MYB60 transcription factor mRNA, complete cds /cds=p(1,966) /gb=EU816358

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G108959_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding1562445.8e-10
Myb_DNA-binding6811341.82.7e-09

Sequences