Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G111450_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G111450_P01
Family
Alfin-like
3D structure (top 5)
2RI7 1WEP 1WEU 1WE9 1WEE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487363 Score: 1

Zea mays

GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Arabidopsis thaliana

AT3G11200.1 Score: 1

Zea mays

GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Carica papaya

evm.TU.supercontig_19.165 Score: 1

Zea mays

GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Zea mays

GRMZM2G038066_P01 Score: 1
GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Zea mays

GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Zea mays

GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g60390.1 Score: 1

Physcomitrella patens

83812 Score: 1

Zea mays

GRMZM2G073647_P01 Score: 1
GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Sorghum bicolor

147073 Score: 1

Zea mays

GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Zea mays

GRMZM2G111450_P01 Score: 1
GRMZM2G175293_P01 Score: 1

Vitis vinifera

GSVIVP00038887001 Score: 1

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.43821
Arabidopsis thaliana PHD finger family protein (AT5G05610) mRNA, complete cds /cds=p(163,888) /gb=NM_120643
At.43901
Arabidopsis thaliana PHD finger family protein (AT2G02470) mRNA, complete cds /cds=p(258,1028) /gb=NM_126302
Hv.10724
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.2273
EST1225172 MTY Medicago truncatula cDNA clone MTYAE43, mRNA sequence /clone=MTYAE43 /gb=DW016211
Mtr.2282
EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892
Mtr.7514
Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-7 unknown mRNA /cds=m(170,940) /gb=BT052814
Os.59070
Oryza sativa Japonica Group cDNA, clone: J090069O18, full insert sequence /gb=AK288788
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Pba.10516
WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199
Pba.3342
WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.10516
WS01117.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 3', mRNA sequence /clone=WS01117_L13 /clone_end=3' /gb=CV247299
Pth.16891
Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076
Pth.3342
Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581
Sbi.17390
GABR1_1_E04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1_E04_A002 5', mRNA sequence /clone=GABR1_1_E04_A002 /clone_end=5' /gb=CX612304 /gi=57811024
Sbi.4176
POL1_63_E10.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_63_E10_A002 5', mRNA sequence /clone=POL1_63_E10_A002 /clone_end=5' /gb=CF480096 /gi=34508965
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.7588
WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

Domain Architecture

PHD PF00628 GRMZM2G111450_P01
DomainStartEndBit scoreE-value
PHD19624647.17.1e-11
Alfin-like197243117.75.5e-35

Sequences