Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G114736_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G114736_P01
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

322431 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.918
GRMZM2G114736_P01 Score: 0.918
GRMZM2G114736_P02 Score: 0.918

Arabidopsis thaliana

AT2G47900.1 Score: 1
AT2G47900.2 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.922
GRMZM2G114736_P01 Score: 0.922
GRMZM2G114736_P02 Score: 0.922

Carica papaya

evm.TU.supercontig_9.163 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.912
GRMZM2G114736_P01 Score: 0.912
GRMZM2G114736_P02 Score: 0.912

Coccomyxa sp. C-169

25937 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.97
GRMZM2G114736_P01 Score: 0.97
GRMZM2G114736_P02 Score: 0.97

Micromonas pusilla CCMP1545

35442 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.97
GRMZM2G114736_P01 Score: 0.97
GRMZM2G114736_P02 Score: 0.97

Micromonas sp. RCC299

63330 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.97
GRMZM2G114736_P01 Score: 0.97
GRMZM2G114736_P02 Score: 0.97

Ostreococcus lucimarinus

44336 Score: 1

Zea mays

GRMZM2G081869_P01 Score: 1
GRMZM2G114736_P01 Score: 1
GRMZM2G114736_P02 Score: 1

Physcomitrella patens

221905 Score: 1
58364 Score: 1
221902 Score: 0.957

Zea mays

GRMZM2G001272_P01 Score: 1
GRMZM2G001272_P02 Score: 1
GRMZM2G010531_P01 Score: 1
GRMZM2G010531_P02 Score: 1
GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.942
GRMZM2G114736_P01 Score: 0.942
GRMZM2G114736_P02 Score: 0.942

Populus trichocarpa

820895 Score: 1

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.922
GRMZM2G114736_P01 Score: 0.922
GRMZM2G114736_P02 Score: 0.922

Zea mays

GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.921
GRMZM2G114736_P01 Score: 0.921
GRMZM2G114736_P02 Score: 0.921

Vitis vinifera

GSVIVP00023594001 Score: 1

Expression data

Expressed Sequence Tags

At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
At.31402
Arabidopsis thaliana mRNA for tub family-like protein, clone: RAFL14-43-C05 /gb=AK227861
At.46725
Arabidopsis thaliana ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor (ATTLP9) mRNA, complete cds /cds=p(261,1403) /gb=NM_111513
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.61163
Oryza sativa Japonica Group cDNA clone:J033091L01, full insert sequence /cds=p(199,894) /gb=AK102370
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106

Domain Architecture

Tub PF01167 GRMZM2G114736_P01
DomainStartEndBit scoreE-value
Tub1144354373e-128

Sequences