Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G115717_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G115717_P01
Family
Jumonji

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G11950.1 Score: 1
AT1G62310.1 Score: 1

Zea mays

GRMZM2G025658_P01 Score: 1
GRMZM2G080760_P02 Score: 1
GRMZM2G115717_P01 Score: 0.935
GRMZM2G080760_P01 Score: 0.908

Zea mays

GRMZM2G025658_P01 Score: 1
GRMZM2G115717_P01 Score: 0.905

Oryza sativa subsp. japonica

LOC_Os03g31594.1 Score: 1
LOC_Os03g31594.2 Score: 0.986

Populus trichocarpa

207634 Score: 1
207883 Score: 1

Zea mays

GRMZM2G025658_P01 Score: 1
GRMZM2G080760_P01 Score: 1
GRMZM2G080760_P02 Score: 0.987
GRMZM2G115717_P01 Score: 0.934

Expression data

Expressed Sequence Tags

Hv.4909
BJ484812 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56d17 3', mRNA sequence /clone=bah56d17 /clone_end=3' /gb=BJ484812
Mtr.22381
METAL93TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475949
Os.18195
Oryza sativa Japonica Group cDNA clone:J033020J08, full insert sequence /gb=AK073195
Os.50915
Oryza sativa Japonica Group cDNA clone:001-028-A06, full insert sequence /cds=p(115,1254) /gb=AK059445
Os.6505
Oryza sativa Japonica Group cDNA clone:001-023-A12, full insert sequence /gb=AK059145
Os.79778
Oryza sativa (japonica cultivar-group) Os02g0109400 (Os02g0109400) mRNA, complete cds /cds=p(1,2994) /gb=NM_001052179
Os.82084
T9 Water-deficit induced fragments in rice seminal root tips Oryza sativa cDNA clone T9, mRNA sequence /clone=T9 /gb=CB238462
Sbi.5380
POL1_69_A04.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_69_A04_A002 5', mRNA sequence /clone=POL1_69_A04_A002 /clone_end=5' /gb=CF481008 /gi=34509877
Vvi.11982
CAP0006_IVR_F05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0006_IVR_F05 3', mRNA sequence /clone=CAP0006_IVR_F05 /clone_end=3' /gb=CF519154
Vvi.4830
CAB2SG0004_IaR_D10 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0004_IaR_D10 3', mRNA sequence /clone=CAB2SG0004_IaR_D10 /clone_end=3' /gb=CB348379

Domain Architecture

JmjC PF02373 GRMZM2G115717_P01
DomainStartEndBit scoreE-value
JmjC74586263.57.8e-16
AT_hook93895011.10.32

Sequences