Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G117060_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G117060_P01
Family
SNF2
3D structure (top 5)
2FWR 1Z3I 1Z5Z 1Z63 1WP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484134 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Arabidopsis thaliana

AT2G02090.1 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Coccomyxa sp. C-169

81916 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Micromonas pusilla CCMP1545

16856 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Micromonas sp. RCC299

60953 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Ostreococcus lucimarinus

38436 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Zea mays

GRMZM2G117060_P02 Score: 1
GRMZM2G172356_P02 Score: 1
GRMZM2G117060_P01 Score: 0.984
GRMZM2G172356_P01 Score: 0.984

Oryza sativa subsp. japonica

LOC_Os04g47830.1 Score: 1

Ostreococcus tauri

17347 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Physcomitrella patens

147434 Score: 1
148543 Score: 0.917

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Populus trichocarpa

566361 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Sorghum bicolor

145412 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Selaginella moellendorffii

139206 Score: 1

Zea mays

GRMZM2G117060_P01 Score: 1
GRMZM2G172356_P01 Score: 1

Expression data

Expressed Sequence Tags

At.13358
Arabidopsis thaliana SNF2/RAD54 family (ETL1 subfamily) protein (At2g02090; F5O4.14) mRNA, complete cds /cds=p(198,2489) /gb=AY059857
Mtr.17927
MTYD886TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV257480
Os.24587
Oryza sativa (japonica cultivar-group) Os04g0566100 (Os04g0566100) mRNA, complete cds /cds=p(1,1770) /gb=NM_001060113
Ppa.4658
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1507) mRNA, complete cds /cds=p(1,1896) /gb=XM_001779467
Ppa.7506
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1508) mRNA, complete cds /cds=p(1,2097) /gb=XM_001780415
Vvi.11500
WIN026.TB24.1_B06 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN026_B06 3', mRNA sequence /clone=WIN026_B06 /clone_end=3' /gb=EC924623

Domain Architecture

SNF2_N PF00176 GRMZM2G117060_P01
DomainStartEndBit scoreE-value
SNF2_N426730255.11.7e-73
Helicase_C833911831.1e-21

Sequences