Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G124502_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G124502_P01
Family
SWI/SNF-BAF60b
3D structure (top 5)
1UHR 1V31 2Z5S 1V32
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

492627 Score: 1

Zea mays

GRMZM2G083880_P03 Score: 1
GRMZM2G124502_P03 Score: 1
GRMZM2G083880_P01 Score: 0.968
GRMZM2G083880_P02 Score: 0.968
GRMZM2G124502_P01 Score: 0.968
GRMZM2G124502_P02 Score: 0.968

Arabidopsis thaliana

AT4G22360.1 Score: 1

Zea mays

GRMZM2G083880_P03 Score: 1
GRMZM2G124502_P03 Score: 1
GRMZM2G083880_P01 Score: 0.965
GRMZM2G083880_P02 Score: 0.965
GRMZM2G124502_P01 Score: 0.965
GRMZM2G124502_P02 Score: 0.965

Carica papaya

evm.TU.supercontig_75.109 Score: 1

Zea mays

GRMZM2G083880_P03 Score: 1
GRMZM2G124502_P03 Score: 1
GRMZM2G083880_P01 Score: 0.965
GRMZM2G083880_P02 Score: 0.965
GRMZM2G124502_P01 Score: 0.965
GRMZM2G124502_P02 Score: 0.965

Physcomitrella patens

187352 Score: 1

Zea mays

GRMZM2G083880_P01 Score: 1
GRMZM2G083880_P02 Score: 1
GRMZM2G083880_P03 Score: 1
GRMZM2G124502_P01 Score: 1
GRMZM2G124502_P02 Score: 1
GRMZM2G124502_P03 Score: 1

Populus trichocarpa

761789 Score: 1

Zea mays

GRMZM2G083880_P03 Score: 1
GRMZM2G124502_P03 Score: 1
GRMZM2G083880_P01 Score: 0.964
GRMZM2G083880_P02 Score: 0.964
GRMZM2G124502_P01 Score: 0.964
GRMZM2G124502_P02 Score: 0.964

Expression data

Expressed Sequence Tags

At.21353
Arabidopsis thaliana SWIB complex BAF60b domain-containing protein (AT4G22360) mRNA, complete cds /cds=p(152,1309) /gb=NM_118362
Hv.16410
BES1824102l03 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010L032 5-PRIME, mRNA sequence /clone=MPMGp2010L03102 /clone_end=5' /gb=CK123229
Os.12517
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O18, full insert sequence /gb=CT831666
Os.17366
Oryza sativa Japonica Group cDNA clone:J013069K23, full insert sequence /gb=AK066509
Os.74091
Oryza sativa Japonica Group cDNA clone:J013106F10, full insert sequence /gb=AK067322
Pba.1329
WS02520.BR_A14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_A14 5', mRNA sequence /clone=WS02520_A14 /clone_end=5' /gb=DT477471
Pth.1329
Populus trichocarpa clone WS01211_F18 unknown mRNA /cds=p(130,1287) /gb=EF146651
Pth.16620
WS02520.BR_A14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_A14 5', mRNA sequence /clone=WS02520_A14 /clone_end=5' /gb=DT477471
Vvi.16590
WIN057.C21_L13 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN057_L13 3', mRNA sequence /clone=WIN057_L13 /clone_end=3' /gb=EC938801

Domain Architecture

DEK_C PF08766 GRMZM2G124502_P01
DomainStartEndBit scoreE-value
DEK_C35831.53.4e-06
SWIB206281125.71.5e-34
SWIB31038467.35.6e-17

Sequences