Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G126590_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G126590_P01
Family
SNF2
3D structure (top 5)
2FWR 1Z3I 1Z5Z 3DMQ 1Z63
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_34.18 Score: 1

Zea mays

GRMZM2G126590_P01 Score: 1
GRMZM2G126590_P02 Score: 1
GRMZM2G126590_P03 Score: 0.992
GRMZM2G126590_P04 Score: 0.992

Micromonas pusilla CCMP1545

18757 Score: 1

Zea mays

GRMZM2G126590_P01 Score: 1
GRMZM2G126590_P02 Score: 1
GRMZM2G126590_P03 Score: 0.993
GRMZM2G126590_P04 Score: 0.993

Expression data

Expressed Sequence Tags

At.39549
Arabidopsis thaliana PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase (PIE1) mRNA, complete cds /cds=p(595,6762) /gb=NM_112117
At.40578
Arabidopsis thaliana ATCHR12; ATP binding / DNA binding (ATCHR12) mRNA, complete cds /cds=p(1,3399) /gb=NM_111475
At.40665
Arabidopsis thaliana CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase (CHR5) mRNA, complete cds /cds=p(344,5518) /gb=NM_126926
At.43995
Arabidopsis thaliana homeotic gene regulator, putative (AT5G19310) mRNA, complete cds /cds=p(128,3322) /gb=NM_121936
Os.17548
Oryza sativa Japonica Group cDNA clone:J023010H23, full insert sequence /gb=AK120785
Os.52584
Oryza sativa Japonica Group cDNA clone:J013133N02, full insert sequence /gb=AK068173
Sbi.5953
POL1_53_G03.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_53_G03_A002 3', mRNA sequence /clone=POL1_53_G03_A002 /clone_end=3' /gb=CF488968 /gi=34517837

Domain Architecture

SNF2_N PF00176 GRMZM2G126590_P01
DomainStartEndBit scoreE-value
SNF2_N2276366.74.2e-107
Helicase_C559637102.11.9e-27

Sequences