Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G132405_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G132405_P01
Family
SNF2
3D structure (top 5)
1Z3I 1Z5Z 1Z63
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.13358
Arabidopsis thaliana SNF2/RAD54 family (ETL1 subfamily) protein (At2g02090; F5O4.14) mRNA, complete cds /cds=p(198,2489) /gb=AY059857
At.21564
Arabidopsis thaliana unknown protein (AT1G35510) mRNA, complete cds /cds=p(322,2028) /gb=NM_103245
At.41947
Arabidopsis thaliana unknown protein (AT1G14970) mRNA, complete cds /cds=p(1,1689) /gb=NM_101366
At.42486
Arabidopsis thaliana unknown protein (AT2G01480) mRNA, complete cds /cds=p(259,1962) /gb=NM_126209
At.48271
Arabidopsis thaliana unknown protein (AT1G38131) mRNA, complete cds /cds=p(172,1941) /gb=NM_148521
At.72896
Arabidopsis thaliana unknown protein (AT1G38065) mRNA, complete cds /cds=p(1,1413) /gb=NM_179424
Mtr.14938
EST639585 MTUS Medicago truncatula cDNA clone MTUS-45D8, mRNA sequence /clone=MTUS-45D8 /gb=CA921867
Os.21075
Oryza sativa Japonica Group cDNA clone:002-172-G05, full insert sequence /gb=AK110878
Os.24587
Oryza sativa (japonica cultivar-group) Os04g0566100 (Os04g0566100) mRNA, complete cds /cds=p(1,1770) /gb=NM_001060113
Os.52209
Oryza sativa Japonica Group cDNA clone:J013000B05, full insert sequence /cds=p(235,1494) /gb=AK111491
Os.61031
Oryza sativa Japonica Group cDNA, clone: J075145N05, full insert sequence /gb=AK288044
Os.6301
Oryza sativa Japonica Group cDNA clone:001-002-B05, full insert sequence /cds=p(143,1147) /gb=AK060210
Os.80271
Oryza sativa (japonica cultivar-group) Os05g0459600 (Os05g0459600) mRNA, complete cds /cds=p(1,1560) /gb=NM_001062286
Ppa.2422
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_123314) mRNA, complete cds /cds=p(1,1677) /gb=XM_001760676
Ppa.4658
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1507) mRNA, complete cds /cds=p(1,1896) /gb=XM_001779467
Ppa.7506
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1508) mRNA, complete cds /cds=p(1,2097) /gb=XM_001780415
Vvi.16089
CAbud0001_IIF_F04 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0001_IIF_F04 5', mRNA sequence /clone=CAbud0001_IIF_F04 /clone_end=5' /gb=CF510668
Vvi.19587
CSECS180E10_INFu0031 CabSau Immature Inflorescence Stage 31 (INFu0031) Vitis vinifera cDNA clone CSECS180E10 3', mRNA sequence /clone=CSECS180E10 /clone_end=3' /gb=DV938591

Domain Architecture

DUF246 PF03138 GRMZM2G132405_P01
DomainStartEndBit scoreE-value
DUF24618308130.65.1e-36
SNF2_N472716-63.64.4e-05

Sequences