Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G140156_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G140156_P01
Family
ARID
3D structure (top 5)
1C20 1IG6 2EQY 2JRZ 2JXJ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484793 Score: 1

Zea mays

GRMZM2G093668_P01 Score: 1
GRMZM2G140156_P01 Score: 0.943
GRMZM2G093668_P02 Score: 0.906

Arabidopsis thaliana

AT3G43240.1 Score: 1

Zea mays

GRMZM2G093668_P01 Score: 1
GRMZM2G140156_P01 Score: 0.943
GRMZM2G093668_P02 Score: 0.906

Carica papaya

evm.TU.supercontig_82.49 Score: 1

Zea mays

GRMZM2G093668_P01 Score: 1
GRMZM2G140156_P01 Score: 0.935

Chlamydomonas reinhardtii

186244 Score: 1

Zea mays

GRMZM2G140156_P01 Score: 1
GRMZM2G093668_P01 Score: 0.945

Coccomyxa sp. C-169

82285 Score: 1

Zea mays

GRMZM2G140156_P01 Score: 1
GRMZM2G093668_P01 Score: 0.945

Physcomitrella patens

741 Score: 1

Zea mays

GRMZM2G140156_P01 Score: 1
GRMZM2G093668_P01 Score: 0.93

Populus trichocarpa

260021 Score: 1

Zea mays

GRMZM2G093668_P01 Score: 1
GRMZM2G140156_P01 Score: 0.941
GRMZM2G093668_P02 Score: 0.904

Selaginella moellendorffii

431374 Score: 1

Zea mays

GRMZM2G093668_P01 Score: 1
GRMZM2G140156_P01 Score: 0.96
GRMZM2G093668_P02 Score: 0.934

Zea mays

GRMZM2G093668_P01 Score: 1
GRMZM2G140156_P01 Score: 0.935

Vitis vinifera

GSVIVP00034008001 Score: 1

Expression data

Expressed Sequence Tags

At.36303
Arabidopsis thaliana ARID/BRIGHT DNA-binding domain-containing protein (AT3G43240) mRNA, complete cds /cds=p(303,2546) /gb=NM_114192
Cre.16177
Chlamydomonas reinhardtii DNA binding protein (CHLREDRAFT_186244) mRNA, complete cds /cds=p(147,2336) /gb=XM_001702638
Hv.20573
AV936309 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal10n23 3', mRNA sequence /clone=baal10n23 /clone_end=3' /gb=AV936309
Mtr.11956
EST608595 GLSD Medicago truncatula cDNA clone pGLSD-30L12, mRNA sequence /clone=pGLSD-30L12 /gb=BQ123019
Mtr.12681
NF105E12IN1F1099 Insect herbivory Medicago truncatula cDNA clone NF105E12IN 5', mRNA sequence /clone=NF105E12IN /clone_end=5' /gb=BI266889
Mtr.9271
EST334404 DSIL Medicago truncatula cDNA clone pDSIL-1M15, mRNA sequence /clone=pDSIL-1M15 /gb=AW775339
Os.22539
Oryza sativa Japonica Group cDNA clone:J013099I15, full insert sequence /cds=p(655,2049) /gb=AK067357
Os.47452
Oryza sativa Japonica Group cDNA clone:J023071G16, full insert sequence /gb=AK070805
Os.52973
Oryza sativa Japonica Group cDNA clone:J023045L20, full insert sequence /gb=AK070207
Os.77817
Oryza sativa Japonica Group cDNA clone:J013050J22, full insert sequence /gb=AK066110
Os.85524
Oryza sativa Japonica Group cDNA, clone: J075110D07, full insert sequence /gb=AK288003
Ptp.11732
X034C11 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU896019
Sbi.8042
RHOH1_28_H04.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_28_H04_A002 3', mRNA sequence /clone=RHOH1_28_H04_A002 /clone_end=3' /gb=CN128279 /gi=45955016
Vvi.13806
SBB06988 Inflorescence (VvS11) Vitis vinifera cDNA clone SBB06988, mRNA sequence /clone=SBB06988 /gb=EE104837
Vvi.20422
WIN0516.C21_N06 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0516_N06 3', mRNA sequence /clone=WIN0516_N06 /clone_end=3' /gb=EC937867

Domain Architecture

ARID PF01388 GRMZM2G140156_P01
DomainStartEndBit scoreE-value
ARID576698-6.50.00077

Sequences