Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G143046_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G143046_P02
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

473935 Score: 1

Zea mays

GRMZM2G143046_P02 Score: 1
GRMZM2G143046_P01 Score: 0.957

Arabidopsis thaliana

AT1G48000.1 Score: 1

Zea mays

GRMZM2G143046_P02 Score: 1
GRMZM2G143046_P01 Score: 0.956

Carica papaya

evm.TU.supercontig_145.21 Score: 1

Zea mays

GRMZM2G143046_P02 Score: 1
GRMZM2G143046_P01 Score: 0.96

Populus trichocarpa

225994 Score: 1

Zea mays

GRMZM2G143046_P02 Score: 1
GRMZM2G143046_P01 Score: 0.954

Sorghum bicolor

4845240 Score: 1

Zea mays

GRMZM2G143046_P02 Score: 1
GRMZM2G143046_P01 Score: 0.938

Vitis vinifera

GSVIVP00030360001 Score: 1

Expression data

Expressed Sequence Tags

At.10914
Arabidopsis thaliana MYB62 (myb domain protein 62); DNA binding / transcription factor (MYB62) mRNA, complete cds /cds=p(1,861) /gb=NM_105503
At.14823
Arabidopsis thaliana putative transcription factor MYB108 (MYB108) mRNA, complete cds /cds=p(155,1126) /gb=AF262733
At.16915
Arabidopsis thaliana putative transcription factor MYB112 mRNA, complete cds /cds=p(84,815) /gb=AY008377
At.16925
Arabidopsis thaliana putative transcription factor (MYB116) mRNA, complete cds /cds=p(130,981) /gb=AF334815
At.226
Arabidopsis thaliana ATMYB21 (MYB DOMAIN PROTEIN 21); DNA binding / transcription factor (ATMYB21) mRNA, complete cds /cds=p(176,856) /gb=NM_113696
At.36396
Arabidopsis thaliana mRNA for MYB transcription factor, complete cds, clone: RAFL16-42-L19 /cds=p(83,904) /gb=AK229140
At.9662
Arabidopsis thaliana AtMYB78 (myb domain protein 78); DNA binding / transcription factor (AtMYB78) mRNA, complete cds /cds=p(1,924) /gb=NM_124340
Hv.19391
HVSMEi0025K10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEi0025K10f, mRNA sequence /clone=HVSMEi0025K10f /gb=BG369720
Mtr.18646
s13dNF45C02GS006_461126 Germinating Seed Medicago truncatula cDNA, mRNA sequence /gb=CX538934
Mtr.7346
NF091A12FL1F1088 Developing flower Medicago truncatula cDNA clone NF091A12FL 5', mRNA sequence /clone=NF091A12FL /clone_end=5' /gb=BI272897
Os.31381
Oryza sativa (japonica cultivar-group) Os01g0128000 (Os01g0128000) mRNA, complete cds /cds=p(128,1180) /gb=NM_001048443
Os.32634
Oryza sativa Japonica Group cDNA clone:J033129J22, full insert sequence /cds=p(54,956) /gb=AK103455
Os.49619
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H09, full insert sequence /gb=CT830663
Os.67955
Oryza sativa Japonica Group cDNA, clone: J065186D02, full insert sequence /cds=p(95,976) /gb=AK241615
Os.87822
Oryza sativa (japonica cultivar-group) Os11g0684000 (Os11g0684000) mRNA, complete cds /cds=p(144,926) /gb=NM_001074998
Pba.6140
WS02545.B21_K14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_K14 3', mRNA sequence /clone=WS02545_K14 /clone_end=3' /gb=DT490684
Pth.17603
WS02545.B21_K14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_K14 3', mRNA sequence /clone=WS02545_K14 /clone_end=3' /gb=DT490684
Ptp.12305
R008E05 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU884273
Ptp.6685
K026P22.5pR Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA clone K026P22 5', mRNA sequence /clone=K026P22 /clone_end=5' /gb=DN494318
Vvi.9027
WIN059.C21_C06 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN059_C06 3', mRNA sequence /clone=WIN059_C06 /clone_end=3' /gb=EC939286

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G143046_P02
DomainStartEndBit scoreE-value
Myb_DNA-binding5710445.32.3e-10
Myb_DNA-binding11015551.43.6e-12

Sequences