Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G144196_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G144196_P02
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 1L9Z 2A6H 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

482682 Score: 1

Zea mays

GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 1

Arabidopsis thaliana

AT2G36990.1 Score: 1

Zea mays

GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 1

Chlorella sp. NC64A

35462 Score: 1

Zea mays

GRMZM2G144196_P02 Score: 1.02
GRMZM2G144196_P03 Score: 1.02
GRMZM2G144196_P01 Score: 1

Carica papaya

evm.TU.supercontig_56.12 Score: 1

Zea mays

GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 1

Coccomyxa sp. C-169

18553 Score: 1
44246 Score: 1

Zea mays

GRMZM2G144196_P01 Score: 1
GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 1

Zea mays

GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 0.981

Oryza sativa subsp. japonica

LOC_Os08g14450.1 Score: 1

Populus trichocarpa

809851 Score: 1

Zea mays

GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 0.991

Sorghum bicolor

4866801 Score: 1

Zea mays

GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 0.961

Zea mays

GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 1

Vitis vinifera

GSVIVP00023225001 Score: 1

Expression data

Expressed Sequence Tags

Hv.5367
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf134o11, mRNA sequence /gb=AK251756
Os.27634
Oryza sativa Japonica Group cDNA clone:J013170C15, full insert sequence /gb=AK068874
Pba.2302
WS02548.C21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_D22 3', mRNA sequence /clone=WS02548_D22 /clone_end=3' /gb=DT491608
Pth.2302
WS02548.C21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_D22 3', mRNA sequence /clone=WS02548_D22 /clone_end=3' /gb=DT491608
Sbi.14156
GABR1_10_A12.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_10_A12_A002 5', mRNA sequence /clone=GABR1_10_A12_A002 /clone_end=5' /gb=CX613835 /gi=57812555
Vvi.2744
WIN0529.C21_I24 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0529_I24 3', mRNA sequence /clone=WIN0529_I24 /clone_end=3' /gb=EC943674

Domain Architecture

Sigma70_r2 PF04542 GRMZM2G144196_P02
DomainStartEndBit scoreE-value
Sigma70_r230637684.15e-22
Sigma70_r338046176.21.2e-19
Sigma70_r447452775.12.5e-19

Sequences