Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G146514_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G146514_P01
Family
C3H
3D structure (top 5)
1M9O 2D9N 2E5S 2CQE 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G02830.1 Score: 1

Zea mays

GRMZM2G100794_P01 Score: 1
GRMZM2G146514_P02 Score: 1
GRMZM2G146514_P01 Score: 0.989
GRMZM2G146514_P03 Score: 0.937

Populus trichocarpa

249034 Score: 1
424416 Score: 1

Zea mays

GRMZM2G100794_P01 Score: 1
GRMZM2G146514_P01 Score: 1
GRMZM2G146514_P02 Score: 0.97
GRMZM2G146514_P03 Score: 0.909

Zea mays

GRMZM2G146514_P01 Score: 1
GRMZM2G146514_P02 Score: 1
GRMZM2G146514_P03 Score: 0.924

Vitis vinifera

GSVIVP00025101001 Score: 1

Expression data

Expressed Sequence Tags

At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Hv.12900
HVSMEn0019K14f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0019K14f, mRNA sequence /clone=HVSMEn0019K14f /gb=BI959434
Mtr.10625
EST1225273 MTY Medicago truncatula cDNA clone MTYAF64, mRNA sequence /clone=MTYAF64 /gb=DW016312
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102
Sbi.1345
NIT1_29_E12.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_29_E12_A002 5', mRNA sequence /clone=NIT1_29_E12_A002 /clone_end=5' /gb=CF434363 /gi=34447064
Vvi.9025
VV_PEd0014f11.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240837

Domain Architecture

zf-CCCH PF00642 GRMZM2G146514_P01
DomainStartEndBit scoreE-value
zf-CCCH558137.26.4e-08
zf-CCCH10012644.25.2e-10
zf-CCCH14617243.29.9e-10
zf-CCCH30733346.41.1e-10
zf-CCCH35337944.73.6e-10

Sequences