Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G147619_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G147619_P01
Family
SET
3D structure (top 5)
2R3A 1H3I 3F9X 2RFI 1ML9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

316589 Score: 1

Zea mays

GRMZM2G072440_P04 Score: 1
GRMZM2G147619_P04 Score: 1
GRMZM2G072440_P02 Score: 0.921
GRMZM2G147619_P01 Score: 0.921
GRMZM2G072440_P03 Score: 0.906
GRMZM2G147619_P02 Score: 0.906

Arabidopsis thaliana

AT1G76710.1 Score: 1
AT1G76710.2 Score: 1

Zea mays

GRMZM2G072440_P04 Score: 1
GRMZM2G147619_P04 Score: 1
GRMZM2G072440_P02 Score: 0.918
GRMZM2G147619_P01 Score: 0.918
GRMZM2G072440_P03 Score: 0.903
GRMZM2G147619_P02 Score: 0.903

Carica papaya

evm.TU.supercontig_49.86 Score: 1

Zea mays

GRMZM2G072440_P04 Score: 1
GRMZM2G147619_P04 Score: 1
GRMZM2G072440_P02 Score: 0.919
GRMZM2G147619_P01 Score: 0.919
GRMZM2G072440_P03 Score: 0.903
GRMZM2G147619_P02 Score: 0.903

Coccomyxa sp. C-169

28526 Score: 1

Zea mays

GRMZM2G072440_P04 Score: 1
GRMZM2G147619_P04 Score: 1
GRMZM2G072440_P02 Score: 0.949
GRMZM2G147619_P01 Score: 0.949
GRMZM2G072440_P03 Score: 0.939
GRMZM2G147619_P02 Score: 0.939

Populus trichocarpa

801345 Score: 1

Zea mays

GRMZM2G072440_P04 Score: 1
GRMZM2G147619_P04 Score: 1
GRMZM2G072440_P02 Score: 0.916
GRMZM2G147619_P01 Score: 0.916

Zea mays

GRMZM2G072440_P04 Score: 1
GRMZM2G147619_P04 Score: 1
GRMZM2G072440_P02 Score: 0.921
GRMZM2G147619_P01 Score: 0.921
GRMZM2G072440_P03 Score: 0.906
GRMZM2G147619_P02 Score: 0.906

Vitis vinifera

GSVIVP00031726001 Score: 1

Expression data

Expressed Sequence Tags

At.70058
Arabidopsis thaliana ASHH1/SDG26 (ASH1-RELATED PROTEIN 1) (ASHH1/SDG26) mRNA, complete cds /cds=p(211,1689) /gb=NM_202429
Hv.22736
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf146l11, mRNA sequence /gb=AK252160
Os.26731
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI237O24, full insert sequence /gb=CT831991
Pth.16156
F128P16.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F128P16 3', mRNA sequence /clone=F128P16 /clone_end=3' /gb=CK091823
Sbi.6281
OX1_41_B01.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_41_B01_A002 3', mRNA sequence /clone=OX1_41_B01_A002 /clone_end=3' /gb=CN136133 /gi=45968781

Domain Architecture

SET PF00856 GRMZM2G147619_P01
DomainStartEndBit scoreE-value
SET69198179.41e-50

Sequences