Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G148810_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G148810_P01
Family
Alfin-like
3D structure (top 5)
2RI7 1WEP 1WE9 1WEU 1WEE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G063864_P01 Score: 1
GRMZM2G073647_P01 Score: 1
GRMZM2G107807_P01 Score: 1
GRMZM2G148810_P01 Score: 1
GRMZM2G107807_P02 Score: 0.979
GRMZM2G017142_P01 Score: 0.947

Zea mays

GRMZM2G073647_P01 Score: 1
GRMZM2G148810_P01 Score: 1
GRMZM2G017142_P01 Score: 0.945

Oryza sativa subsp. japonica

LOC_Os05g07040.1 Score: 1

Sorghum bicolor

4894087 Score: 1

Selaginella moellendorffii

99900 Score: 1

Zea mays

GRMZM2G017142_P01 Score: 1
GRMZM2G148810_P01 Score: 1

Zea mays

GRMZM2G148810_P01 Score: 1
GRMZM2G017142_P01 Score: 0.908

Vitis vinifera

GSVIVP00029300001 Score: 1

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.43821
Arabidopsis thaliana PHD finger family protein (AT5G05610) mRNA, complete cds /cds=p(163,888) /gb=NM_120643
At.68535
Arabidopsis thaliana PHD finger family protein (AT5G20510) mRNA, complete cds /cds=p(63,845) /gb=NM_122058
Hv.10448
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129c12, mRNA sequence /gb=AK251639
Hv.10724
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.2273
EST1225172 MTY Medicago truncatula cDNA clone MTYAE43, mRNA sequence /clone=MTYAE43 /gb=DW016211
Mtr.2282
EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892
Os.51192
Oryza sativa Japonica Group cDNA clone:006-308-G07, full insert sequence /gb=AK061479
Os.59070
Oryza sativa Japonica Group cDNA, clone: J090069O18, full insert sequence /gb=AK288788
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Pba.10516
WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199
Pba.3342
WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.10516
WS01117.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 3', mRNA sequence /clone=WS01117_L13 /clone_end=3' /gb=CV247299
Pth.16891
Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076
Pth.3342
Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581
Sbi.6112
CCC1_34_A12.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_34_A12_A007 5', mRNA sequence /clone=CCC1_34_A12_A007 /clone_end=5' /gb=CD224562 /gi=30967996
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.7588
WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

Domain Architecture

PHD PF00628 GRMZM2G148810_P01
DomainStartEndBit scoreE-value
PHD19724744.83.4e-10
Alfin-like1982441184.5e-35

Sequences