Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G154100_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G154100_P01
Family
SNF2
3D structure (top 5)
2FWR 1Z3I 1Z5Z 3DMQ 1WP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

344116 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 1

Arabidopsis thaliana

AT2G25170.1 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 0.992

Chlorella sp. NC64A

144734 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 0.995

Carica papaya

evm.TU.supercontig_127.13 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 0.988

Oryza sativa subsp. japonica

LOC_Os06g08480.1 Score: 1

Physcomitrella patens

145844 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 1

Populus trichocarpa

415868 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 0.992

Sorghum bicolor

5010592 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 0.984

Selaginella moellendorffii

155996 Score: 1

Zea mays

GRMZM2G154100_P02 Score: 1
GRMZM2G154100_P01 Score: 0.996

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 1

Vitis vinifera

GSVIVP00032703001 Score: 1

Expression data

Expressed Sequence Tags

At.11745
Arabidopsis thaliana PKL (PICKLE) (PKL) mRNA, complete cds /cds=p(25,4179) /gb=NM_128074
At.54572
Arabidopsis thaliana chromatin remodeling factor, putative (AT4G31900) mRNA, complete cds /cds=p(1,3609) /gb=NM_119341
Hv.20329
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf127d19, mRNA sequence /gb=AK251718
Os.87711
Oryza sativa chromatin-remodeling factor CHD3 (PKL) mRNA, complete cds /cds=p(1,4083) /gb=AY062186
Ppa.22788
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1512) mRNA, partial cds /cds=p(1,3663) /gb=XM_001758649

Domain Architecture

Chromo PF00385 GRMZM2G154100_P01
DomainStartEndBit scoreE-value
Chromo197248545.7e-13
ResIII27746316.72.1e-06
SNF2_N283581361.41.7e-105
Helicase_C63871796.59e-26
DUF108783389797.64.2e-26
DUF10869091058139.41.1e-38

Sequences