Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G167780_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G167780_P01
Family
SNF2
3D structure (top 5)
3DMQ 1Z5Z 1Z63 1WP9 2FWR
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G167780_P01 Score: 0.918
GRMZM2G035802_P01 Score: 0.911

Zea mays

GRMZM2G167780_P01 Score: 1
GRMZM2G035802_P01 Score: 0.919

Oryza sativa subsp. japonica

LOC_Os07g46590.1 Score: 1

Zea mays

GRMZM2G167780_P01 Score: 0.916
GRMZM2G035802_P01 Score: 0.908

Expression data

Expressed Sequence Tags

At.40665
Arabidopsis thaliana CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase (CHR5) mRNA, complete cds /cds=p(344,5518) /gb=NM_126926
Mtr.11964
EST647900 HOGA Medicago truncatula cDNA clone HOGA-33J17, mRNA sequence /clone=HOGA-33J17 /gb=CB895108
Os.11138
Oryza sativa Japonica Group cDNA clone:001-117-C02, full insert sequence /gb=AK063537
Ppa.17372
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1544) mRNA, partial cds /cds=p(1,4335) /gb=XM_001781952

Domain Architecture

Chromo PF00385 GRMZM2G167780_P01
DomainStartEndBit scoreE-value
Chromo7212757.64.6e-14
SNF2_N167453416.83.4e-122
Helicase_C51459395.12.4e-25

Sequences