Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G168096_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G168096_P01
Family
SNF2
3D structure (top 5)
2IW3 1Z3I 2FWR 3DMQ 1Z5Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

866853 Score: 1

Zea mays

GRMZM2G168096_P01 Score: 1
GRMZM2G180705_P01 Score: 1

Arabidopsis thaliana

AT3G54280.1 Score: 1

Zea mays

GRMZM2G168096_P01 Score: 1
GRMZM2G180705_P01 Score: 0.996

Cyanidioschyzon merolae

CMS464C Score: 1

Zea mays

GRMZM2G168096_P01 Score: 1
GRMZM2G180705_P01 Score: 0.998

Zea mays

GRMZM2G180705_P01 Score: 1
GRMZM2G168096_P01 Score: 0.995

Coccomyxa sp. C-169

75072 Score: 1

Zea mays

GRMZM2G168096_P01 Score: 1
GRMZM2G180705_P01 Score: 1

Micromonas pusilla CCMP1545

50939 Score: 1

Zea mays

GRMZM2G168096_P01 Score: 1
GRMZM2G180705_P01 Score: 1

Micromonas sp. RCC299

62843 Score: 1

Zea mays

GRMZM2G168096_P01 Score: 1
GRMZM2G180705_P01 Score: 0.998

Physcomitrella patens

184534 Score: 1

Zea mays

GRMZM2G180705_P01 Score: 1
GRMZM2G168096_P01 Score: 0.992

Populus trichocarpa

823728 Score: 1

Zea mays

GRMZM2G168096_P01 Score: 1
GRMZM2G180705_P01 Score: 0.996

Sorghum bicolor

4855583 Score: 1

Zea mays

GRMZM2G180705_P01 Score: 1
GRMZM2G168096_P01 Score: 0.965

Selaginella moellendorffii

186944 Score: 1

Zea mays

GRMZM2G168096_P01 Score: 1
GRMZM2G180705_P01 Score: 1

Zea mays

GRMZM2G180705_P01 Score: 1
GRMZM2G168096_P01 Score: 0.992

Vitis vinifera

GSVIVP00023017001 Score: 1

Expression data

Expressed Sequence Tags

At.35125
Arabidopsis thaliana ATP binding / DNA binding / helicase (AT3G54280) mRNA, complete cds /cds=p(1,6117) /gb=NM_115288
Hv.8874
HVSMEg0002I01f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0002I01f, mRNA sequence /clone=HVSMEg0002I01f /gb=AW982244
Os.53125
OC02F12 OC Oryza sativa cDNA 5' similar to helicase mot1, mRNA sequence /clone_end=5' /gb=BE039708
Os.58792
Oryza sativa Japonica Group cDNA clone:J023066D07, full insert sequence /gb=AK070938
Os.84115
CI351235 Oryza sativa (japonica cultivar-group) flower Oryza sativa (japonica cultivar-group) cDNA clone J02B3066D07M3 3', mRNA sequence /clone=J02B3066D07M3 /clone_end=3' /gb=CI351235
Ppa.21477
Physcomitrella patens subsp. patens SNF2 superfamily chromatin remodeling protein (CHR1532) mRNA, complete cds /cds=p(1,6126) /gb=XM_001765165
Sbi.4371
FE1_12_E08.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_12_E08_A002 5', mRNA sequence /clone=FE1_12_E08_A002 /clone_end=5' /gb=CF073830 /gi=33110489
Vvi.10472
WIN0211.TB24_D14 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN0211_D14 3', mRNA sequence /clone=WIN0211_D14 /clone_end=3' /gb=EC926130

Domain Architecture

HEAT PF02985 GRMZM2G168096_P01
DomainStartEndBit scoreE-value
HEAT397522.10.0024
HEAT57861424.90.00033
HEAT1289132429.61.2e-05
HEAT1368140422.30.0019
SNF2_N14551763368.61.1e-107
Helicase_C18451923745.6e-19

Sequences