Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G170049_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G170049_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

347985 Score: 1
354228 Score: 1

Zea mays

GRMZM2G122690_P01 Score: 1
GRMZM2G170049_P01 Score: 1

Arabidopsis thaliana

AT4G25560.1 Score: 1

Zea mays

GRMZM2G122690_P01 Score: 1
GRMZM2G170049_P01 Score: 1

Carica papaya

evm.TU.supercontig_107.45 Score: 1

Zea mays

GRMZM2G122690_P01 Score: 1
GRMZM2G170049_P01 Score: 1

Zea mays

GRMZM2G122690_P01 Score: 1
GRMZM2G170049_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g42850.2 Score: 1

Sorghum bicolor

5004823 Score: 1

Zea mays

GRMZM2G122690_P01 Score: 1
GRMZM2G170049_P01 Score: 1

Zea mays

GRMZM2G122690_P01 Score: 1
GRMZM2G170049_P01 Score: 1

Vitis vinifera

GSVIVP00010499001 Score: 1

Expression data

Expressed Sequence Tags

At.10907
Arabidopsis thaliana AtMYB50 (myb domain protein 50); DNA binding / transcription factor (AtMYB50) mRNA, complete cds /cds=p(24,968) /gb=NM_104552
At.10913
Arabidopsis thaliana putative transcription factor (At1g09540) mRNA, complete cds /cds=p(173,1273) /gb=AY063939
At.227
Arabidopsis thaliana ATMYB4 (myb domain protein 4); transcription repressor (ATMYB4) mRNA, complete cds /cds=p(131,1189) /gb=NM_180548
At.28678
61-L022342-065-009-E08-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 009-E08, mRNA sequence /clone=009-E08 /gb=DR750347
Hv.10975
BNEL42e10 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL42e10 5' similar to OSJNBb0039L24.8, mRNA sequence /clone=BNEL42e10 /clone_end=5' /gb=CV058923
Hv.20297
BNEL83e5 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL83e5 5' similar to OSJNBb0039L24.8, mRNA sequence /clone=BNEL83e5 /clone_end=5' /gb=CV062831
Mtr.16033
EST5313075 GESD Medicago truncatula cDNA clone pGESD10F11 5' end, mRNA sequence /clone=pGESD10F11 /clone_end=5' /gb=BI311325
Mtr.19352
Medicago truncatula clone MTYFL_FM_FN_FO1G-P-4 unknown mRNA /cds=m(263,1366) /gb=BT052849
Os.54935
Oryza sativa Japonica Group cDNA clone:002-124-C09, full insert sequence /cds=p(189,1010) /gb=AK107135
Os.79776
Oryza sativa (japonica cultivar-group) Os02g0114800 (Os02g0114800) mRNA, complete cds /cds=p(1,894) /gb=NM_001052206
Os.9971
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108D17, full insert sequence /gb=CT837840

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G170049_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding156249.11.8e-11
Myb_DNA-binding6811349.81.1e-11

Sequences