Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G171588_P02

Identification

Species:
Zea mays
Gene model
GRMZM2G171588_P02
Family
SWI/SNF-BAF60b
3D structure (top 5)
2Z5S 1UHR 1V31 1V32 1Q1V
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

318665 Score: 1

Zea mays

GRMZM2G171588_P01 Score: 1
GRMZM2G171588_P02 Score: 0.93

Arabidopsis thaliana

AT3G19080.1 Score: 1

Zea mays

GRMZM2G171588_P01 Score: 1
GRMZM2G171588_P02 Score: 1
GRMZM2G124620_P01 Score: 0.901

Cyanidioschyzon merolae

CMM087C Score: 1

Zea mays

GRMZM2G124620_P01 Score: 1
GRMZM2G171588_P02 Score: 0.926

Chlorella sp. NC64A

49597 Score: 1

Zea mays

GRMZM2G171588_P02 Score: 1
GRMZM2G124620_P01 Score: 0.924
GRMZM2G171588_P01 Score: 0.921

Chlamydomonas reinhardtii

194816 Score: 1

Zea mays

GRMZM2G124620_P01 Score: 1
GRMZM2G171588_P02 Score: 0.912

Coccomyxa sp. C-169

82403 Score: 1

Zea mays

GRMZM2G171588_P02 Score: 1
GRMZM2G124620_P01 Score: 0.924
GRMZM2G171588_P01 Score: 0.921

Micromonas sp. RCC299

106177 Score: 1

Zea mays

GRMZM2G124620_P01 Score: 1
GRMZM2G171588_P02 Score: 1
GRMZM2G171588_P01 Score: 0.922

Populus trichocarpa

208461 Score: 1

Sorghum bicolor

123164 Score: 1

Zea mays

GRMZM2G124620_P01 Score: 1
GRMZM2G171588_P02 Score: 1

Expression data

Expressed Sequence Tags

At.53383
Arabidopsis thaliana SWIB complex BAF60b domain-containing protein (AT3G19080) mRNA, complete cds /cds=p(1,1389) /gb=NM_112794
Hv.19903
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf50c07, mRNA sequence /gb=AK249847
Mtr.22867
Medicago truncatula clone MTYFH_FI_FJ_FK1G-K-6 unknown mRNA /cds=p(129,1090) /gb=BT052803
Pth.15668
WS0123.B21_P17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0123_P17 3', mRNA sequence /clone=WS0123_P17 /clone_end=3' /gb=CV237747
Sbi.17406
OX1_27_H12.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_27_H12_A002 3', mRNA sequence /clone=OX1_27_H12_A002 /clone_end=3' /gb=CN134611 /gi=45966272

Domain Architecture

DEK_C PF08766 GRMZM2G171588_P02
DomainStartEndBit scoreE-value
DEK_C35681.33.4e-21
SWIB132207149.31.2e-41
SWIB248325133.66.1e-37

Sequences