Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G173633_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G173633_P01
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_12.88 Score: 1

Zea mays

GRMZM2G162695_P02 Score: 1
GRMZM2G173633_P01 Score: 1

Zea mays

GRMZM2G162695_P02 Score: 1
GRMZM2G173633_P01 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g39470.1 Score: 1

Sorghum bicolor

5042024 Score: 1

Zea mays

GRMZM2G162695_P02 Score: 1
GRMZM2G173633_P01 Score: 1

Zea mays

GRMZM2G162695_P02 Score: 1
GRMZM2G173633_P01 Score: 1

Vitis vinifera

GSVIVP00033458001 Score: 1

Expression data

Expressed Sequence Tags

At.10920
Arabidopsis thaliana AtMYB74 (myb domain protein 74); DNA binding / transcription factor (AtMYB74) mRNA, complete cds /cds=p(104,1078) /gb=NM_116749
At.2261
Arabidopsis thaliana ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor (ATM4/ATMYB102) mRNA, complete cds /cds=p(109,1161) /gb=NM_118264
At.2669
Arabidopsis thaliana AtMYB41 (myb domain protein 41); DNA binding / transcription factor (AtMYB41) mRNA, complete cds /cds=p(1,849) /gb=NM_118951
At.48268
Arabidopsis thaliana AtMYB93 (myb domain protein 93); DNA binding / transcription factor (AtMYB93) mRNA, complete cds /cds=p(1,1098) /gb=NM_103190
At.50533
Arabidopsis thaliana ATMYB103/ATMYB80/MS188/MYB103 (MYB DOMAIN PROTEIN 80); DNA binding / transcription factor (ATMYB103/ATMYB80/MS188/MYB103) mRNA, complete cds /cds=p(1,963) /gb=NM_124993
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
At.69663
Arabidopsis thaliana MYB106 (myb domain protein 106); DNA binding / transcription factor (MYB106) mRNA, complete cds /cds=p(154,1320) /gb=NM_110979
At.9932
Arabidopsis thaliana AtMYB9 (myb domain protein 9); DNA binding (AtMYB9) mRNA, complete cds /cds=p(326,1336) /gb=NM_203063
Hv.21121
H.vulgare myb2 mRNA /cds=p(44,799) /gb=X70876
Hv.26413
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180h20, mRNA sequence /gb=AK248651
Hv.26842
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence /gb=AK248579
Mtr.19694
EST1224335 MTY Medicago truncatula cDNA clone MTYA430, mRNA sequence /clone=MTYA430 /gb=DW015374
Os.21636
Oryza sativa Japonica Group cDNA clone:J023049M10, full insert sequence /gb=AK121023
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.58166
Oryza sativa (japonica cultivar-group) Os04g0470600 (Os04g0470600) mRNA, complete cds /cds=p(1,1119) /gb=NM_001059587
Os.78787
Oryza sativa (japonica cultivar-group) Os06g0221000 (Os06g0221000) mRNA, complete cds /cds=p(1,969) /gb=NM_001063709
Os.80847
Oryza sativa Japonica Group cDNA, clone: J090031E07, full insert sequence /gb=AK288415
Os.83361
Oryza sativa (japonica cultivar-group) Os02g0579300 (Os02g0579300) mRNA, complete cds /cds=p(1,1029) /gb=NM_001053764
Pth.12469
UM45TE12.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM45TE12 5', mRNA sequence /clone=UM45TE12 /clone_end=5' /gb=DN500996
Vvi.5500
CAB10005_Ia_Fa_G10 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10005_Ia_Fa_G10 5', mRNA sequence /clone=CAB10005_Ia_Fa_G10 /clone_end=5' /gb=CB971701

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G173633_P01
DomainStartEndBit scoreE-value
Myb_DNA-binding146149.31.5e-11
Myb_DNA-binding6711242.91.2e-09

Sequences