Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G176572_P04

Identification

Species:
Zea mays
Gene model
GRMZM2G176572_P04
Family
MYB
3D structure (top 5)
1IRZ 1OFC 2CU7 2CJJ 2ELK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Zea mays

GRMZM2G176572_P01 Score: 1
GRMZM2G176572_P02 Score: 1
GRMZM2G176572_P03 Score: 1
GRMZM2G176572_P04 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g04930.1 Score: 1

Populus trichocarpa

172406 Score: 1

Zea mays

GRMZM2G176572_P01 Score: 1
GRMZM2G176572_P02 Score: 1
GRMZM2G176572_P03 Score: 1
GRMZM2G176572_P04 Score: 1

Sorghum bicolor

125262 Score: 1

Zea mays

GRMZM2G176572_P01 Score: 1
GRMZM2G176572_P02 Score: 1
GRMZM2G176572_P03 Score: 1
GRMZM2G176572_P04 Score: 1

Expression data

Expressed Sequence Tags

At.27639
Arabidopsis thaliana myb family transcription factor (AT5G01200) mRNA, complete cds /cds=p(1,804) /gb=NM_120198
At.46819
Arabidopsis thaliana myb family transcription factor (AT2G38090) mRNA, complete cds /cds=p(568,1464) /gb=NM_129365
At.7757
Arabidopsis thaliana myb family transcription factor (AT5G58900) mRNA, complete cds /cds=p(668,1534) /gb=NM_125280
At.8762
Arabidopsis thaliana myb family transcription factor (AT5G08520) mRNA, complete cds /cds=p(622,1518) /gb=NM_120937
Mtr.1448
Medicago truncatula clone MTYF9_FA_FB_FC1G-K-6 unknown mRNA /cds=p(950,1648) /gb=BT051984
Os.15556
Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence /gb=AK106166
Os.1619
Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence /cds=p(288,1172) /gb=AK067964
Os.18392
Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence /cds=p(396,1343) /gb=AK068138
Os.42406
Oryza sativa Japonica Group cDNA clone:001-030-C10, full insert sequence /gb=AK111988
Pba.8945
WS02522.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B09 3', mRNA sequence /clone=WS02522_B09 /clone_end=3' /gb=DT483252
Ppa.8167
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147199) mRNA, complete cds /cds=p(1,858) /gb=XM_001779294
Pth.8945
WS02522.B21_B09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_B09 3', mRNA sequence /clone=WS02522_B09 /clone_end=3' /gb=DT483252
Sbi.18629
RHOH1_38_E10.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_38_E10_A002 5', mRNA sequence /clone=RHOH1_38_E10_A002 /clone_end=5' /gb=CN130005 /gi=45958162
Sbi.7738
OX1_7_C05.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_7_C05_A002 5', mRNA sequence /clone=OX1_7_C05_A002 /clone_end=5' /gb=CN132676 /gi=45962913
Vvi.19568
WIN1138.C21_J18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_J18 3', mRNA sequence /clone=WIN1138_J18 /clone_end=3' /gb=EC990110
Vvi.5667
CAP0001_IVF_H04 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0001_IVF_H04 5', mRNA sequence /clone=CAP0001_IVF_H04 /clone_end=5' /gb=CF515425

Domain Architecture

Myb_DNA-binding PF00249 GRMZM2G176572_P04
DomainStartEndBit scoreE-value
Myb_DNA-binding277530.95.1e-06
Myb_DNA-binding13818550.28.1e-12

Sequences