Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: GRMZM2G177165_P01

Identification

Species:
Zea mays
Gene model
GRMZM2G177165_P01
Family
SNF2
3D structure (top 5)
2FWR 1Z3I 1Z5Z 1Z63 1WP9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496925 Score: 1

Arabidopsis thaliana

AT5G66750.1 Score: 1

Cyanidioschyzon merolae

CMJ200C Score: 1

Chlorella sp. NC64A

22847 Score: 1

Carica papaya

evm.TU.supercontig_55.90 Score: 1

Chlamydomonas reinhardtii

196757 Score: 1

Coccomyxa sp. C-169

81159 Score: 1

Micromonas pusilla CCMP1545

54122 Score: 1

Micromonas sp. RCC299

58978 Score: 1

Ostreococcus lucimarinus

37662 Score: 1

Ostreococcus tauri

913 Score: 1

Physcomitrella patens

210776 Score: 1

Populus trichocarpa

250259 Score: 1

Sorghum bicolor

4787057 Score: 1

Selaginella moellendorffii

110395 Score: 1

Vitis vinifera

GSVIVP00024954001 Score: 1

Expression data

Expressed Sequence Tags

At.28851
Arabidopsis thaliana CHR01/DDM1 (DECREASED DNA METHYLATION 1); helicase (CHR01/DDM1) mRNA, complete cds /cds=p(100,2394) /gb=NM_126073
Hv.2667
HDP19F18w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP19F18, mRNA sequence /clone=HDP19F18 /gb=EX596749
Os.48755
Oryza sativa Japonica Group OsDDM1b mRNA for chromatin remodeling factor DDM1b, complete cds /cds=p(279,2828) /gb=AB177379
Os.6189
Oryza sativa Japonica Group OsDDM1a mRNA for chromatin remodeling factor DDM1a, complete cds /cds=p(134,2671) /gb=AB177378

Domain Architecture

SNF2_N PF00176 GRMZM2G177165_P01
DomainStartEndBit scoreE-value
SNF2_N219514392.47.6e-115
Helicase_C570649983.2e-26

Sequences